CuGenDBv2

Gene ID	Lsi10G013900
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	scarecrow-like transcription factor 11 (SCL11)
Genome location	chr10:18015510..18018168
RNA-Seq Expression	Lsi10G013900
Synteny	Lsi10G013900
Gene Ontology terms	GO:0000460 - maturation of 5.8S rRNA (biological process)
InterPro domains	IPR019324 - M-phase phosphoprotein 6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6570693.1 hypothetical protein SDJN03_29608, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-83

85.64

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QREEQPKKEEEVKPDENFFPSSTIIRKCVV+VEGDPHPGAFKGRMSFQSFNPSID+LNEEVAS GQHEIP SSSGNHSGN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSS       R+NGSS+NEA CSNIDEK+CEAN DLKRKQSE VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

XP_022943951.1 uncharacterized protein LOC111448524 isoform X1 [Cucurbita moschata]

8.9e-88

86.67

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QRE+QPK+EEEVKPDENFFPSSTIIRKCVV+VEGDPHPGAFKGRMSFQSFNPSID+LNEE+AS GQHEIP SSSGNHSGN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSSRQ  LFPR+NGSS+NEA CSNIDEK+CEAN DLKRKQSE VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

XP_022943952.1 uncharacterized protein LOC111448524 isoform X2 [Cucurbita moschata]

1.9e-82

84.1

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QRE+QPK+EEEVKPDENFFPSSTIIRKCVV+VEGDPHPGAFKGRMSFQSFNPSID+LNEE+AS GQHEIP SSSGNHSGN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSS       R+NGSS+NEA CSNIDEK+CEAN DLKRKQSE VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

XP_022986944.1 uncharacterized protein LOC111484532 isoform X1 [Cucurbita maxima]

2.5e-82

83.59

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QREE PKKEEEVK DENFFPSSTIIRKCVV+VEGD HPG FKGRMSFQSFNPSID+LNE+VAS  QHEIP SS GNH GN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSSRQ FLFPR+NGSS+NEA CSN DEK+CEAN DLKRKQS  VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

XP_023512011.1 uncharacterized protein LOC111776852 isoform X1 [Cucurbita pepo subsp. pepo]

3.4e-87

87.18

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QREEQPKKEEEVK DENFFPSSTIIRKCVV+VEG PHPGAFKGRMSFQSFNPSID+LNEEVAS GQHEIP SSSGNHSGN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSSRQ FLFPR+NGSS+NE +CSNIDEK+CEAN DLKRKQSE VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FT40 uncharacterized protein LOC111448524 isoform X1

4.3e-88

86.67

Show/hide

Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QRE+QPK+EEEVKPDENFFPSSTIIRKCVV+VEGDPHPGAFKGRMSFQSFNPSID+LNEE+AS GQHEIP SSSGNHSGN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSSRQ  LFPR+NGSS+NEA CSNIDEK+CEAN DLKRKQSE VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

A0A6J1FUG1 uncharacterized protein LOC111448524 isoform X2

9.3e-83

84.1

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QRE+QPK+EEEVKPDENFFPSSTIIRKCVV+VEGDPHPGAFKGRMSFQSFNPSID+LNEE+AS GQHEIP SSSGNHSGN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSS       R+NGSS+NEA CSNIDEK+CEAN DLKRKQSE VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

A0A6J1G7T2 uncharacterized protein LOC111451657

1.3e-76

81.03

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKREISNTLRNLKFMQRA+Q+EEQPKKEEEVKP+EN FPSS IIRKCVV+VEGDPHPGA +GR+SFQSFNPSIDKLNEEVAS GQ E P  SSGNHS N
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        +SS       RENGSSRNEAV SN DEK+CE NGDLKRKQSE VSEG+HPTKF KSGRD QQSSF+NGK  FKKPKGE LDWNVLRPSK PNK G
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

A0A6J1JFF6 uncharacterized protein LOC111484532 isoform X2

1.3e-76

80.51

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QREE PKKEEEVK DENFFPSSTIIRKCVV+VEGD HPG FKGRMSFQSFNPSID+LNE+VAS  QHEIP SS GNH GN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSS       R+NGSS+NEA CSN DEK+CEAN DLKRKQS  VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

A0A6J1JHH4 uncharacterized protein LOC111484532 isoform X1

1.2e-82

83.59

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Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA QREE PKKEEEVK DENFFPSSTIIRKCVV+VEGD HPG FKGRMSFQSFNPSID+LNE+VAS  QHEIP SS GNH GN
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG
        LSSRQ FLFPR+NGSS+NEA CSN DEK+CEAN DLKRKQS  VS+G+HPTKF +SGRD QQSSFS+GK P KKPKGEKLDWNVLRPSK PNKSG
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G59460.1 scarecrow-like transcription factor 11 (SCL11)

4.3e-32

48.7

Show/hide

Query:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN
        MAKREIS+TLRNLKFMQR+S + E+ K +EE +P+ +F    T+ +KCVVI + DP PGA  GRMSFQSFNPSI+KL+EE  + G    P SSS N    
Subjt:  MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGN

Query:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNK
           +++F  P            S+  E   E +GDLKRKQSE VSE Q+    S    DK   S   G   FKKPK +K+DW+VLRP K   K
Subjt:  LSSRQTFLFPRENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAAGCGCGAGATTTCCAATACATTAAGAAACTTGAAGTTCATGCAAAGGGCCTCTCAGAGAGAGGAGCAACCCAAGAAAGAGGAAGAAGTAAAACCTGATGAGAA
TTTCTTTCCTTCGAGTACCATAATCAGAAAGTGTGTGGTTATAGTTGAAGGAGATCCTCATCCAGGGGCTTTTAAAGGTCGAATGTCATTTCAGAGCTTTAATCCTTCAA
TTGATAAACTCAATGAAGAAGTAGCTAGCTCAGGGCAGCATGAAATTCCACGCTCTTCATCTGGGAATCACAGTGGAAACCTTTCATCAAGACAAACATTTTTGTTTCCC
AGAGAAAATGGATCTTCACGAAACGAAGCAGTGTGCTCAAACATCGATGAAAAAGATTGTGAGGCTAACGGGGACCTTAAAAGGAAACAATCTGAAGGCGTGTCTGAAGG
ACAACATCCAACTAAGTTTTCAAAAAGTGGTCGGGACAAGCAGCAGTCATCATTTAGTAATGGTAAAAAACCGTTCAAGAAGCCAAAGGGTGAAAAGCTGGACTGGAATG
TTCTTAGGCCCTCTAAGGCTCCCAATAAGAGTGGGTAA

mRNA sequence

Show/hide mRNA sequence

AAGATTTAGTTGGAGTTTTGAAAAAATAAAAAGTTAAAAGGAAAGAGAAAAAGAAAAAGAGATAAGAATACAACGAAAGCCCTAGTCTCCATTTCTTCTTCCTCTTCCCT
TGCAGTCGCCCACCACCCCCTCCTTCTGCTCAATCTTCTTCTCCGGCGGCGGCCATTCCCTCCAGTAGCCACAGGCGTAAGACAGCGACGACTGGAGCCCACACCCACGC
GAACGCCCAGCACTGTTGTCGACGACGGTCTGCGTTCACTCGCGAATCTGACTTGCATTTGTGACCACGACTCCGAACGGCTTCGCCTATGCTTTCGGAGCATCGTTTCT
TCTCCTTTTGAGACTCCAACGTGAACAGCAAGTTGTGCATCACGTTTTCGACGACTGGGTGTCTTGCAACGGCGTTTTTGACTTGGGGGCTTTCTAAAAATTGATGTTTG
TTCAAGGAAGGAGATTATCGGATTGAGAATTATAGGATTGTTGATTGAAGCTCGTTGTTCGAGCTTTCTTTTGCCCCAACCATAATGGCGAAGCGCGAGATTTCCAATAC
ATTAAGAAACTTGAAGTTCATGCAAAGGGCCTCTCAGAGAGAGGAGCAACCCAAGAAAGAGGAAGAAGTAAAACCTGATGAGAATTTCTTTCCTTCGAGTACCATAATCA
GAAAGTGTGTGGTTATAGTTGAAGGAGATCCTCATCCAGGGGCTTTTAAAGGTCGAATGTCATTTCAGAGCTTTAATCCTTCAATTGATAAACTCAATGAAGAAGTAGCT
AGCTCAGGGCAGCATGAAATTCCACGCTCTTCATCTGGGAATCACAGTGGAAACCTTTCATCAAGACAAACATTTTTGTTTCCCAGAGAAAATGGATCTTCACGAAACGA
AGCAGTGTGCTCAAACATCGATGAAAAAGATTGTGAGGCTAACGGGGACCTTAAAAGGAAACAATCTGAAGGCGTGTCTGAAGGACAACATCCAACTAAGTTTTCAAAAA
GTGGTCGGGACAAGCAGCAGTCATCATTTAGTAATGGTAAAAAACCGTTCAAGAAGCCAAAGGGTGAAAAGCTGGACTGGAATGTTCTTAGGCCCTCTAAGGCTCCCAAT
AAGAGTGGGTAA

Protein sequence

Show/hide protein sequence

MAKREISNTLRNLKFMQRASQREEQPKKEEEVKPDENFFPSSTIIRKCVVIVEGDPHPGAFKGRMSFQSFNPSIDKLNEEVASSGQHEIPRSSSGNHSGNLSSRQTFLFP
RENGSSRNEAVCSNIDEKDCEANGDLKRKQSEGVSEGQHPTKFSKSGRDKQQSSFSNGKKPFKKPKGEKLDWNVLRPSKAPNKSG

Lsi10G013900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome