CuGenDBv2

Gene ID	Lsi10G014200
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Thylakoid soluble phosphoprotein TSP
Genome location	chr10:18300658..18300951
RNA-Seq Expression	Lsi10G014200
Synteny	Lsi10G014200
Gene Ontology terms	NA
InterPro domains	IPR021584 - Thylakoid soluble phosphoprotein TSP9 IPR037244 - Thylakoid soluble phosphoprotein TSP9 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010512.1 hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-34

86.6

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD    + +GTV GGRKNSVQVPPKKN GGFGGLFAK++
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

XP_004143212.1 uncharacterized protein LOC101205268 [Cucumis sativus]

4.4e-43

96.91

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAA+GNGTG+VRGGRKNSVQVPPKKNGGGFGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

XP_008464052.1 PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo]

1.7e-39

92.78

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD  +GNGTGTVR GRKNSVQ+PPKKNGG FGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

XP_023532336.1 uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]

4.1e-33

83.51

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASL  AFSPAAGRVFAATAAKGAGESKKEKG+LDWI+G + KDQLLETDPVLQKVEGK+  A NG GTVRGG+KNSVQVPPKKN G FGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

XP_038901860.1 uncharacterized protein LOC120088545 [Benincasa hispida]

7.7e-40

94.85

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASLPIAFSPAA RVFAATAAKGAGESKKE+GLLDWIIGSLNKDQLLETDPVLQKVEGK AAAGNG+GTVRGGRKNSVQVPPKKNGGGFGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KC59 Uncharacterized protein

2.1e-43

96.91

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAA+GNGTG+VRGGRKNSVQVPPKKNGGGFGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

A0A1S3CKK5 uncharacterized protein LOC103502033

8.3e-40

92.78

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD  +GNGTGTVR GRKNSVQ+PPKKNGG FGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

A0A5A7V5S9 Uncharacterized protein

8.3e-40

92.78

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD  +GNGTGTVR GRKNSVQ+PPKKNGG FGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

A0A6J1G777 uncharacterized protein LOC111451452

5.8e-33

82.47

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+  A NG GTVRGG+KNSVQVPPKKN G FGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

A0A6J1L2X7 uncharacterized protein LOC111499927

5.8e-33

82.47

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+  A NG GTVRGG+KNSVQVPPKKN G FGGLFAKK+
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G47070.1 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

9.1e-15

44.09

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGL
        ++SL ++F+PA  RV+A +   G+G  K+EK  +D+++G + K DQ  ET+P+L+KV+ K+     G GTVRGG+ ++    PKK+ GGFGGL
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGL

Sequences

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CDS sequence

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ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGACGTGTCTTCGCAGCCACGGCGGCGAAGGGCGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGAT
CATCGGAAGCTTGAATAAGGATCAGCTTCTTGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGTAAGGACGCTGCCGCCGGTAACGGCACCGGCACCGTCCGCGGTGGCC
GGAAGAATTCTGTCCAAGTTCCTCCGAAGAAGAACGGCGGCGGATTTGGTGGTCTCTTTGCCAAGAAAGAATGA

mRNA sequence

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Protein sequence

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MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

Lsi10G014200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome