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Lsi10G015240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G015240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCCT domain-containing protein
Genome locationchr10:19599911..19601755
RNA-Seq ExpressionLsi10G015240
SyntenyLsi10G015240
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646876.1 hypothetical protein Csa_021098 [Cucumis sativus]2.9e-5577.24Show/hide
Query:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN---FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEF
        MASFPH FY DL YPN  SDLQ+LLMA+GDTGMCGIRNN+NN N   F   EETFV SF QTVSP+QSSSDT LSP LTMQ+PDLYGPVSDMTVPSL EF
Subjt:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN---FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEF

Query:  NMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNKE
        NM TYDIHSLIN QPQVPGTCNYG++L+GFVPE KPLY +TW  +
Subjt:  NMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNKE

KAG7010436.1 hypothetical protein SDJN02_27229, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-5268.64Show/hide
Query:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIR----NNNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFN
        MASFPHFYSDLLYPN  SDLQSLLMA+GD  + GIR    NNNNNIN    EETF P+  Q  S E   SDT SPLLTM YPDL       TVPS  EFN
Subjt:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIR----NNNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFN

Query:  MGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNK-EEEESWLQELAASLMYLPYVTNYGV
         G Y IHS+I +QP+VPG+CNY +ELLGFVP+ KP Y   WNK EEEESWLQELAASLMYLPYVTNYGV
Subjt:  MGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNK-EEEESWLQELAASLMYLPYVTNYGV

XP_004150045.2 uncharacterized protein LOC101221095 [Cucumis sativus]1.1e-5750.74Show/hide
Query:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN---FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEF
        MASFPH FY DL YPN  SDLQ+LLMA+GDTGMCGIRNN+NN N   F   EETFV SF QTVSP+QSSSDT LSP LTMQ+PDLYGPVSDMTVPSL EF
Subjt:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN---FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEF

Query:  NMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW----------------------------------------------------------
        NM TYDIHSLIN QPQVPGTCNYG++L+GFVPE KPLY +TW                                                          
Subjt:  NMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW----------------------------------------------------------

Query:  -------------------------------------------NKEEEESWLQELAASLMYLPYVTNYGV
                                                   NKEEEESWLQELA SLMYLPYV NYGV
Subjt:  -------------------------------------------NKEEEESWLQELAASLMYLPYVTNYGV

XP_016901933.1 PREDICTED: uncharacterized protein LOC103496299 [Cucumis melo]2.9e-5577.55Show/hide
Query:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN-----FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLS
        MASFPH FYSD LYPN  SDLQ+LLMA+GD+GMCGIRNNNNN N     F   EETF+P F QTVSPEQSSSDT LSP LTMQ+PDLYGPVSDMTVPSL 
Subjt:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN-----FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLS

Query:  EFNMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNKE
        EFNM TYDIHSLI+ QPQVPGTCNYG+ELLGFVPE KPLY +TW  +
Subjt:  EFNMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNKE

XP_038902616.1 zinc finger protein CONSTANS-LIKE 1-like [Benincasa hispida]9.3e-6253.93Show/hide
Query:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIR-NNNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFN-MG
        MASFPHFYSDLLYPN +SDLQSLLMA GDTGMC +R NNNNNI+F+L EETFVPSF QTVSPEQSSSDTLSPLLTMQYPDLYG VSDM VPSL EFN M 
Subjt:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIR-NNNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFN-MG

Query:  TYDIHSLI-NSQPQVPGTCNYGEELLGFVPEFKPLYCETW------------------------------------------------------------
        TYDIHSLI N+QPQVPGTCNY EE LGFVPE KPLY +TW                                                            
Subjt:  TYDIHSLI-NSQPQVPGTCNYGEELLGFVPEFKPLYCETW------------------------------------------------------------

Query:  ----------------------------------------NKEEEESWLQELAASLMYLPYVTNYGV
                                                NKEEEESWLQELAASLMYLPYVTNYG+
Subjt:  ----------------------------------------NKEEEESWLQELAASLMYLPYVTNYGV

TrEMBL top hitse value%identityAlignment
A0A0A0KGC0 CCT domain-containing protein5.1e-5850.74Show/hide
Query:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN---FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEF
        MASFPH FY DL YPN  SDLQ+LLMA+GDTGMCGIRNN+NN N   F   EETFV SF QTVSP+QSSSDT LSP LTMQ+PDLYGPVSDMTVPSL EF
Subjt:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN---FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEF

Query:  NMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW----------------------------------------------------------
        NM TYDIHSLIN QPQVPGTCNYG++L+GFVPE KPLY +TW                                                          
Subjt:  NMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW----------------------------------------------------------

Query:  -------------------------------------------NKEEEESWLQELAASLMYLPYVTNYGV
                                                   NKEEEESWLQELA SLMYLPYV NYGV
Subjt:  -------------------------------------------NKEEEESWLQELAASLMYLPYVTNYGV

A0A1S4E134 uncharacterized protein LOC1034962991.4e-5577.55Show/hide
Query:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN-----FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLS
        MASFPH FYSD LYPN  SDLQ+LLMA+GD+GMCGIRNNNNN N     F   EETF+P F QTVSPEQSSSDT LSP LTMQ+PDLYGPVSDMTVPSL 
Subjt:  MASFPH-FYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNIN-----FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLS

Query:  EFNMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNKE
        EFNM TYDIHSLI+ QPQVPGTCNYG+ELLGFVPE KPLY +TW  +
Subjt:  EFNMGTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETWNKE

A0A5D3CAR3 Zinc finger protein CONSTANS-LIKE 41.7e-4577.05Show/hide
Query:  MASGDTGMCGIRNNNNNIN-----FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEFNMGTYDIHSLINSQPQVPGTCNY
        MA+GD+GMCGIRNNNNN N     F   EETF+P F QTVSPEQSSSDT LSP LTMQ+PDLYGPVSDMTVPSL EFNM TYDIHSLI+ QPQVPGTCNY
Subjt:  MASGDTGMCGIRNNNNNIN-----FALMEETFVPSFHQTVSPEQSSSDT-LSPLLTMQYPDLYGPVSDMTVPSLSEFNMGTYDIHSLINSQPQVPGTCNY

Query:  GEELLGFVPEFKPLYCETWNKE
        G+ELLGFVPE KPLY +TW  +
Subjt:  GEELLGFVPEFKPLYCETWNKE

A0A6J1FX75 zinc finger protein CONSTANS-LIKE 1-like isoform X15.7e-4143.68Show/hide
Query:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIRN---NNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFNM
        MASFPHFYSD LYPN  SDLQSLLMA+GD G+ GIRN   NNNNIN    EETFV +  Q  S E   SDT SPLLTM YPDL       TVPS  EFN 
Subjt:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIRN---NNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFNM

Query:  GTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW------------------------------------------------------------
        G Y IHS+I +QP+VPG+CNY +ELLGFVP+ KP Y   W                                                            
Subjt:  GTYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW------------------------------------------------------------

Query:  ----------------------------------NKEEEESWLQELAASLMYLPYVTNYGV
                                           +EEEESWLQELAASLMYLPYVTNYGV
Subjt:  ----------------------------------NKEEEESWLQELAASLMYLPYVTNYGV

A0A6J1JCW3 uncharacterized protein LOC1114838822.6e-3843.46Show/hide
Query:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIR--NNNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFNMG
        MASFPHFYSDLLYPN  SDLQSLLMA+GD  + GIR  NNNNNI+    EETFVPSF Q  S E   SDT SPLLTM YPDL       TVPS  EFN G
Subjt:  MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIR--NNNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFNMG

Query:  TYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW-------------------------------------------------------------
         Y IHS+ +SQP  P +CNY +ELL FVP  KP Y   W                                                             
Subjt:  TYDIHSLINSQPQVPGTCNYGEELLGFVPEFKPLYCETW-------------------------------------------------------------

Query:  ---------------------------------NKEEEESWLQELAASLMYLPYVTNYGV
                                          +EEEESWLQELAASLMYLPYVTNYGV
Subjt:  ---------------------------------NKEEEESWLQELAASLMYLPYVTNYGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCATTTCCTCATTTTTACTCTGACCTTCTTTATCCCAACAAAATTTCTGACCTTCAGAGCCTTTTAATGGCTTCTGGAGATACTGGAATGTGTGGCATTAGAAA
CAACAACAACAATATCAACTTTGCTCTTATGGAAGAAACTTTCGTTCCTTCCTTTCATCAAACAGTGTCACCCGAGCAGTCGTCGTCTGATACTCTCTCGCCCCTCCTAA
CAATGCAGTATCCTGACCTATATGGGCCAGTCTCCGATATGACCGTCCCGTCGTTGTCCGAGTTTAACATGGGTACATACGACATTCATAGCTTAATCAACAGTCAGCCA
CAAGTTCCTGGTACATGCAACTACGGCGAGGAGCTCTTAGGCTTTGTGCCTGAATTCAAGCCCCTCTACTGCGAAACCTGGAACAAGGAAGAAGAAGAAAGCTGGCTGCA
AGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA
mRNA sequenceShow/hide mRNA sequence
AGAAAAAGCATAAATTTTTATTGAGAGACCCCAAGAATCCTCTCTCTGTATTTCTCTCCTTCTTCTTTGAGATCTTTAATTAATTTCTATGGCTTCATTTCCTCATTTTT
ACTCTGACCTTCTTTATCCCAACAAAATTTCTGACCTTCAGAGCCTTTTAATGGCTTCTGGAGATACTGGAATGTGTGGCATTAGAAACAACAACAACAATATCAACTTT
GCTCTTATGGAAGAAACTTTCGTTCCTTCCTTTCATCAAACAGTGTCACCCGAGCAGTCGTCGTCTGATACTCTCTCGCCCCTCCTAACAATGCAGTATCCTGACCTATA
TGGGCCAGTCTCCGATATGACCGTCCCGTCGTTGTCCGAGTTTAACATGGGTACATACGACATTCATAGCTTAATCAACAGTCAGCCACAAGTTCCTGGTACATGCAACT
ACGGCGAGGAGCTCTTAGGCTTTGTGCCTGAATTCAAGCCCCTCTACTGCGAAACCTGGAACAAGGAAGAAGAAGAAAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATG
TATTTACCTTATGTGACAAATTATGGAGTGTAATTTGAGTAAATAATTATTACTCAAATGTAAAATTTTATATATGGACCTTTGTATCTTAAACTAATTATTTAAAATTG
ACCTTTTTTTTGGGGGTGGGGTTTCTAAATTCTTCTCTTTCACTAGTGCTTCTTCATATATGTCAATTCAATTTGATTGCTTTTTAA
Protein sequenceShow/hide protein sequence
MASFPHFYSDLLYPNKISDLQSLLMASGDTGMCGIRNNNNNINFALMEETFVPSFHQTVSPEQSSSDTLSPLLTMQYPDLYGPVSDMTVPSLSEFNMGTYDIHSLINSQP
QVPGTCNYGEELLGFVPEFKPLYCETWNKEEEESWLQELAASLMYLPYVTNYGV