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Lsi10G015440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G015440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionfloral homeotic protein AGAMOUS-like
Genome locationchr10:19860575..19861966
RNA-Seq ExpressionLsi10G015440
SyntenyLsi10G015440
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046658 - anchored component of plasma membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054569.1 floral homeotic protein AGAMOUS [Cucumis melo var. makuwa]1.8e-1567.02Show/hide
Query:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV
        +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQY DENR TYGA+G LMDSD+HYA QDHLTALQLV
Subjt:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV

KAG6570568.1 Agamous-like MADS-box protein MADS1, partial [Cucurbita argyrosperma subsp. sororia]4.5e-1967.03Show/hide
Query:  QNETLCAEMEFMQKR---------------------QQQQQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV
        +NETLCAEMEFMQKR                     QQQQQQQQTNMMQR TYE+V  GQY+ENR+YG +GLMDSDTHYAHQDHLTALQLV
Subjt:  QNETLCAEMEFMQKR---------------------QQQQQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV

XP_022944555.1 floral homeotic protein AGAMOUS-like [Cucurbita moschata]1.0e-1865.93Show/hide
Query:  QNETLCAEMEFMQKRQ---------------------QQQQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV
        +NETLCAEMEFMQKR+                     QQQQQQQTNMMQR TYE+V  GQY+ENR+YG +GLMDSDTHYAHQDHLTALQLV
Subjt:  QNETLCAEMEFMQKRQ---------------------QQQQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV

XP_023512279.1 agamous-like MADS-box protein AGL1 [Cucurbita pepo subsp. pepo]4.6e-1663.53Show/hide
Query:  QNETLCAEMEFMQKRQQQ------------------QQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTAL
        +NETLCAEMEFMQKR+ +                  QQQQQTNMMQR TYE+V  GQY+ENR+YG +GLMDSDTHYAHQDHLT L
Subjt:  QNETLCAEMEFMQKRQQQ------------------QQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTAL

XP_038900672.1 agamous-like MADS-box protein MADS1 [Benincasa hispida]4.1e-2069.23Show/hide
Query:  QNETLCAEMEFMQKR---------------------QQQQQQQQTNMMQRATYESVEGQY-DENRTYGAMGLMDSDTHYAHQDHLTALQLV
        +NETLCAEMEFMQKR                     QQQQQQQQTNMMQRATYE+V GQY D+NR+YGA+GLMDSDTHYAHQDHLTALQLV
Subjt:  QNETLCAEMEFMQKR---------------------QQQQQQQQTNMMQRATYESVEGQY-DENRTYGAMGLMDSDTHYAHQDHLTALQLV

TrEMBL top hitse value%identityAlignment
A0A0A0KC22 Uncharacterized protein8.6e-1667.02Show/hide
Query:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV
        +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQY DENR TYGA+G LMDSD+HYA QDHLTALQLV
Subjt:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV

A0A1S3C3D0 floral homeotic protein AGAMOUS7.2e-1565.59Show/hide
Query:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQL
        +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQY DENR TYGA+G LMDSD+HYA QDHLTALQ+
Subjt:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQL

A0A5A7UMA9 Floral homeotic protein AGAMOUS8.6e-1667.02Show/hide
Query:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV
        +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQY DENR TYGA+G LMDSD+HYA QDHLTALQLV
Subjt:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV

A0A6J1FYQ9 floral homeotic protein AGAMOUS-like4.8e-1965.93Show/hide
Query:  QNETLCAEMEFMQKRQ---------------------QQQQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV
        +NETLCAEMEFMQKR+                     QQQQQQQTNMMQR TYE+V  GQY+ENR+YG +GLMDSDTHYAHQDHLTALQLV
Subjt:  QNETLCAEMEFMQKRQ---------------------QQQQQQQTNMMQRATYESV-EGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV

Q9ARE9 MADS1 protein8.6e-1667.02Show/hide
Query:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV
        +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQY DENR TYGA+G LMDSD+HYA QDHLTALQLV
Subjt:  QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQY-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATTTTCCTATATGTGCAGAATGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGCAACAGCAACAGCAACAACAACAAACGAATATGATGCAAAGGGC
AACATATGAGAGTGTGGAAGGGCAATACGATGAGAATAGAACTTATGGGGCTATGGGGCTTATGGATTCAGACACTCATTATGCCCATCAAGATCATCTCACTGCTCTTC
AGCTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCATTTTCCTATATGTGCAGAATGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGCAACAGCAACAGCAACAACAACAAACGAATATGATGCAAAGGGC
AACATATGAGAGTGTGGAAGGGCAATACGATGAGAATAGAACTTATGGGGCTATGGGGCTTATGGATTCAGACACTCATTATGCCCATCAAGATCATCTCACTGCTCTTC
AGCTTGTTTAA
Protein sequenceShow/hide protein sequence
MVIFLYVQNETLCAEMEFMQKRQQQQQQQQTNMMQRATYESVEGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV