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Lsi10G016050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G016050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr10:20538084..20538497
RNA-Seq ExpressionLsi10G016050
SyntenyLsi10G016050
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010382.1 putative E3 ubiquitin-protein ligase RING1a [Cucurbita argyrosperma subsp. argyrosperma]6.4e-2488.37Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEE-EEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSV+GE+  DQQFSHQDAKQSR EREPKTE EEEEE EEEEQRE LKEGEREDEGREEDEGEEEKQHN+LEEA GAR
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEE-EEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

XP_008448257.1 PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X1 [Cucumis melo]2.2e-2487.06Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R DEGREEDEGEEEKQ  +LEEATG R
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

XP_008448258.1 PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X2 [Cucumis melo]2.2e-2487.06Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R DEGREEDEGEEEKQ  +LEEATG R
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

XP_008448260.1 PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis melo]2.2e-2487.06Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R DEGREEDEGEEEKQ  +LEEATG R
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

XP_038901730.1 putative E3 ubiquitin-protein ligase RING1a [Benincasa hispida]8.1e-2794.25Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEI--EEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEI  EEEEEEEEEQREQLKEGEREDEGR EDEGEEEKQH KLEEA GAR
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEI--EEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

TrEMBL top hitse value%identityAlignment
A0A1S3BIP1 putative E3 ubiquitin-protein ligase RING1b isoform X11.1e-2487.06Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R DEGREEDEGEEEKQ  +LEEATG R
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

A0A1S3BJA1 putative E3 ubiquitin-protein ligase RING1b isoform X21.1e-2487.06Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R DEGREEDEGEEEKQ  +LEEATG R
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

A0A1S3BJV9 putative E3 ubiquitin-protein ligase RING1a isoform X41.1e-2487.06Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R DEGREEDEGEEEKQ  +LEEATG R
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

A0A6J1FTH1 putative E3 ubiquitin-protein ligase RING1b isoform X13.1e-2488.37Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEE-EEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSV+GE+  DQQFSHQDAKQSR EREPKTE EEEEE EEEEQRE LKEGEREDEGREEDEGEEEKQHN+LEEA GAR
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEE-EEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

A0A6J1FY08 putative E3 ubiquitin-protein ligase RING1a isoform X23.1e-2488.37Show/hide
Query:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEE-EEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR
        MPAHKRSWSDSV+GE+  DQQFSHQDAKQSR EREPKTE EEEEE EEEEQRE LKEGEREDEGREEDEGEEEKQHN+LEEA GAR
Subjt:  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEE-EEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAA
GACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGC
AACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGC
TTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAA
GACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGC
AACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGC
TTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG
Protein sequenceShow/hide protein sequence
MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGARGYVTCIPFPFFLDFFCLVVLVPILR
FWLWFLLGLPFAEAVPCVFRFRRKPIL