CuGenDBv2

Gene ID	Lsi11G000020
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Casparian strip membrane protein 1
Genome location	chr11:6139..8177
RNA-Seq Expression	Lsi11G000020
Synteny	Lsi11G000020
Gene Ontology terms	GO:0007043 - cell-cell junction assembly (biological process) GO:0042545 - cell wall modification (biological process) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0048226 - Casparian strip (cellular component) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR006459 - Casparian strip membrane protein IPR006702 - Casparian strip membrane protein domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004143331.1 casparian strip membrane protein 1 [Cucumis sativus]

8.3e-20

83.33

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VALT+NT    AAAAVVSLAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN+H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

XP_008462597.1 PREDICTED: casparian strip membrane protein 1 [Cucumis melo]

8.3e-20

83.33

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VALT+NT    AAAAVVSLAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN+H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

XP_022977901.1 casparian strip membrane protein 1 [Cucurbita maxima]

3.5e-18

79.17

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VAL ++T    AAAAVV+LAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

XP_023544952.1 casparian strip membrane protein 1 [Cucurbita pepo subsp. pepo]

3.5e-18

79.17

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VAL ++T    AAAAVV+LAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

XP_038883194.1 casparian strip membrane protein 1 [Benincasa hispida]

1.4e-19

83.33

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VALT+NT    AAAAVVSLAHSGNSSTNWLS CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLK++H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKJ8 CASP-like protein

4.0e-20

83.33

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VALT+NT    AAAAVVSLAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN+H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

A0A1S3CHB9 CASP-like protein

4.0e-20

83.33

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VALT+NT    AAAAVVSLAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN+H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

A0A5A7SKE2 CASP-like protein

4.0e-20

83.33

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VALT+NT    AAAAVVSLAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN+H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

A0A6J1EEC6 CASP-like protein

1.7e-18

79.17

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VAL ++T    AAAAVV+LAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

A0A6J1IL91 CASP-like protein

1.7e-18

79.17

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VAL ++T    AAAAVV+LAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

SwissProt top hits

e value

%identity

Alignment

B9HBX2 Casparian strip membrane protein 1

2.7e-13

59.42

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK
        VALT+NT    AAAA+V LAH+GNS+TNWL+ C Q+GDF Q+ SGAV+ SF  V+ F+ LI+ SAF+L+
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK

B9IIR5 Casparian strip membrane protein 2

1.6e-13

60.87

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK
        VALT+NT    AAAA+V LAH+GNSSTNWL+ C QFGDF Q+ SGAV+ SF  V+ F+ L++ SAF+L+
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK

B9SX12 Casparian strip membrane protein 1

7.9e-13

59.42

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK
        VALT+NT    AAAA+V LAH+GN S NWL+ C QFGDF Q+ SG V+ SF +VL FLLL++ SA +L+
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK

C6TH93 Casparian strip membrane protein 4

8.7e-12

52.94

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Query:  MVVALTVNTAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKN
        + +A +   AA A+V LAH+GN  +NWL+ CNQFGDF Q+ SGAV+ SF AV+ F+LLI+  A +L+N
Subjt:  MVVALTVNTAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKN

P0DI61 Casparian strip membrane protein 1

1.1e-22

83.33

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Query:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        VALT+NT    AAAAVVSLAHSGNSSTNWL+ CNQFGDF QQASGAV+GSFAAVL FLLLILFSA SLKN+H
Subjt:  VALTVNT----AAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

Arabidopsis top hits

e value

%identity

Alignment

AT2G27370.1 Uncharacterised protein family (UPF0497)

8.1e-13

53.62

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Query:  MVVALTVNTAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNT
        M + L   +A+AA+V LAH+GNSS+NWL  C QFGDF Q  SGAV+ SF A    + L++ SAF+LK T
Subjt:  MVVALTVNTAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNT

AT2G36100.1 Uncharacterised protein family (UPF0497)

2.6e-11

53.62

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Query:  MVVALTVNTAAAA--VVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK
        +VV L  + AAAA  +  LAH+GN STNWL  C QFGDF Q  S AV+    A+LFF++LI+ SA +LK
Subjt:  MVVALTVNTAAAA--VVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK

AT3G11550.1 Uncharacterised protein family (UPF0497)

4.0e-12

53.73

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Query:  LTVNTA----AAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK
        L +NTA    AAA+  LAHSGN +TNWL  C QFGDF Q++SGAV+ +F +V+FF +L++ S  +LK
Subjt:  LTVNTA----AAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK

AT5G06200.1 Uncharacterised protein family (UPF0497)

1.8e-12

57.63

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Query:  TAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK
        +AAAA+V LAH+GN++TNWL  C QFGDF Q+ SGAV+ +FA+V F  +L++ S  SLK
Subjt:  TAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLK

AT5G15290.1 Uncharacterised protein family (UPF0497)

2.6e-11

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Query:  TAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH
        ++AAA+V LAH+GN+ TNW + C QF  F ++ SG++IGSF A++  +LLIL SA +L   H
Subjt:  TAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

Sequences

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CDS sequence

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ATGGTGGTGGCTCTGACTGTGAACACAGCAGCAGCAGCGGTGGTATCTCTAGCACACAGTGGGAACTCAAGCACAAACTGGTTGTCAAGATGCAACCAATTTGGTGACTT
TTTCCAACAAGCCAGTGGGGCTGTCATTGGCTCTTTTGCTGCTGTCTTGTTCTTCCTTTTACTCATCTTGTTCTCTGCTTTTTCTCTCAAAAATACCCATTGA

mRNA sequence

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Protein sequence

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MVVALTVNTAAAAVVSLAHSGNSSTNWLSRCNQFGDFFQQASGAVIGSFAAVLFFLLLILFSAFSLKNTH

Lsi11G000020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome