; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G000450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G000450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHomeodomain-like superfamily protein
Genome locationchr11:511851..517792
RNA-Seq ExpressionLsi11G000450
SyntenyLsi11G000450
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601716.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia]8.2e-4251.91Show/hide
Query:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK
        MRGVVRQY+RSKTPRLRWTPQLHNSFLLAIQSLGG QKATPKL+L+LMDVKG+SISHVKSHLQMYRSMRG D+ RH E          R R    +E   
Subjt:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK

Query:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI
             G++ I        +        I  T  +   + +   + ++TN+EEQK K MG  K N++G RVV           +FD+LSLSLSLQPTNP I
Subjt:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI

Query:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL
        +          S+S +K   IQK E+IDLDLSISL
Subjt:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL

KAG7032464.1 putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosperma]6.3e-4252.34Show/hide
Query:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK
        MRGVVRQY+RSKTPRLRWTPQLHNSFLLAIQSLGG QKATPKL+L+LMDVKG+SISHVKSHLQMYRSMRG D+ RH E          R R    +E   
Subjt:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK

Query:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI
             G++ I        +        I  T  +   + +   + ++TN+EEQK K MG  K N++G RVV           +FD+LSLSLSLQPTNP  
Subjt:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI

Query:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL
         P P +     S+S +K   IQK E+IDLDLSISL
Subjt:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL

XP_022929947.1 myb family transcription factor PHL6-like [Cucurbita moschata]2.2e-4252.34Show/hide
Query:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK
        MRG VRQY+RSKTPRLRWTPQLHNSFLLAIQSLGG QKATPKL+LQLMDVKG+S+SHVKSHLQMYRSMRG D+ RH E          R R    +E   
Subjt:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK

Query:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI
             G++ I        +        I  T  +   + +   + ++TN+EEQK+K MG  K N++G RVV           +FD+LSLSLSLQPTNP  
Subjt:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI

Query:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL
         P P +     SSS +K   IQK E+IDLDLSISL
Subjt:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL

XP_022991492.1 putative Myb family transcription factor At1g14600 [Cucurbita maxima]2.2e-4250.41Show/hide
Query:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAERSRKLCVEEENKYVDRLGKFCI
        MRGVVRQY+RSKTPRLRWTPQLHNSFLLAIQSLGG QKATPKL+LQLMDVKG+SISHVKSHLQMYRSMRG D+ RHAE                  K   
Subjt:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAERSRKLCVEEENKYVDRLGKFCI

Query:  GRREKRRDEKKEEEREGIYETESNLYAN---------------------DYDVKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSL
        G    R+     +E  G Y+     + N                        + ++TN+EEQK K MG  K  ++G RVV           +FD+LSLSL
Subjt:  GRREKRRDEKKEEEREGIYETESNLYAN---------------------DYDVKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSL

Query:  SLQPTNPAIAPFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL
        SLQPTNP   P P +      +S +K   IQKH++IDLDLSISL
Subjt:  SLQPTNPAIAPFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL

XP_023516803.1 putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo]6.9e-4151.07Show/hide
Query:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK
        MRGVVRQY+RSKTPRLRWTPQLHNSFLLAIQSLGG QKATPKL+LQLMDVKG+SISHVKSHLQMYRSMRG D+ RH E          R R    +E   
Subjt:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK

Query:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYDVKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAIAP
        Y  +                       ++   S+ ++    + ++TN+EEQK + MG  K  ++G RVV           ++D+LSLSLSLQPTNP   P
Subjt:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYDVKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAIAP

Query:  FPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL
         P +     SSS +K   IQK E+I+LDLSISL
Subjt:  FPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL

TrEMBL top hitse value%identityAlignment
A0A0L9U0U5 HTH myb-type domain-containing protein2.1e-2766.34Show/hide
Query:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGR----HAERSRKLCVEEENKYVDRLGKFC
        G VRQYIRSK PRLRWTP+LH  F+ AI SLGG QKATPKLVLQLMDVKGL+ISHVKSHLQMYRSMRGDLGR    H++   +   E ++  VD +   C
Subjt:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGR----HAERSRKLCVEEENKYVDRLGKFC

Query:  I
        +
Subjt:  I

A0A0S3SLH8 HTH myb-type domain-containing protein2.1e-2766.34Show/hide
Query:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGR----HAERSRKLCVEEENKYVDRLGKFC
        G VRQYIRSK PRLRWTP+LH  F+ AI SLGG QKATPKLVLQLMDVKGL+ISHVKSHLQMYRSMRGDLGR    H++   +   E ++  VD +   C
Subjt:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGR----HAERSRKLCVEEENKYVDRLGKFC

Query:  I
        +
Subjt:  I

A0A4D6N4K7 Two-component response regulator ARR-B family2.1e-2766.34Show/hide
Query:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGR----HAERSRKLCVEEENKYVDRLGKFC
        G VRQYIRSK PRLRWTP+LH  F+ AI SLGG QKATPKLVLQLMDVKGL+ISHVKSHLQMYRSMRGDLGR    H++   +   E ++  VD +   C
Subjt:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGR----HAERSRKLCVEEENKYVDRLGKFC

Query:  I
        +
Subjt:  I

A0A6J1EP17 myb family transcription factor PHL6-like1.0e-4252.34Show/hide
Query:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK
        MRG VRQY+RSKTPRLRWTPQLHNSFLLAIQSLGG QKATPKL+LQLMDVKG+S+SHVKSHLQMYRSMRG D+ RH E          R R    +E   
Subjt:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAE----------RSRKLCVEEENK

Query:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI
             G++ I        +        I  T  +   + +   + ++TN+EEQK+K MG  K N++G RVV           +FD+LSLSLSLQPTNP  
Subjt:  YVDRLGKFCIGRREKRRDEKKEEEREGIYETESNLYANDYD--VKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSLSLQPTNPAI

Query:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL
         P P +     SSS +K   IQK E+IDLDLSISL
Subjt:  APFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL

A0A6J1JLZ1 putative Myb family transcription factor At1g146001.0e-4250.41Show/hide
Query:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAERSRKLCVEEENKYVDRLGKFCI
        MRGVVRQY+RSKTPRLRWTPQLHNSFLLAIQSLGG QKATPKL+LQLMDVKG+SISHVKSHLQMYRSMRG D+ RHAE                  K   
Subjt:  MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRG-DLGRHAERSRKLCVEEENKYVDRLGKFCI

Query:  GRREKRRDEKKEEEREGIYETESNLYAN---------------------DYDVKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSL
        G    R+     +E  G Y+     + N                        + ++TN+EEQK K MG  K  ++G RVV           +FD+LSLSL
Subjt:  GRREKRRDEKKEEEREGIYETESNLYAN---------------------DYDVKEVTNKEEQKAKTMGHSKDNKNGERVV-------ADKLEFDRLSLSL

Query:  SLQPTNPAIAPFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL
        SLQPTNP   P P +      +S +K   IQKH++IDLDLSISL
Subjt:  SLQPTNPAIAPFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL

SwissProt top hitse value%identityAlignment
A0A0P0X0C0 Myb family transcription factor MPH11.9e-1765.08Show/hide
Query:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRS
        VRQY RS+ PR+RWT ++H  F+ A++ LGG  +ATPK +LQLM VKG+SISH+KSHLQMYRS
Subjt:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRS

A3AWH5 Myb family transcription factor MOF19.8e-2270.51Show/hide
Query:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGRHAERSR
        G VRQYIRSK PRLRWT +LH SF+ AI+ LGG  KATPKL+LQLM VKGL+ISHVKSHLQMYR  R  LG H    R
Subjt:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGRHAERSR

Q0J235 Probable transcription factor RL92.2e-1358.62Show/hide
Query:  KTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR
        + PR+RWT  LH  F+ A++ LGG ++ATPK VL+LMDVK L+++HVKSHLQMYR+++
Subjt:  KTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR

Q700D9 Putative Myb family transcription factor At1g146001.4e-2071.64Show/hide
Query:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR
        G VR Y+RS  PRLRWTP+LH SF+ A+  LGG  KATPKLVL++MDVKGL+ISHVKSHLQMYR  R
Subjt:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR

Q93WJ9 Transcription repressor KAN11.7e-1358.62Show/hide
Query:  KTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR
        + PR+RWT  LH  F+ A++ LGG ++ATPK VL+LMDVK L+++HVKSHLQMYR+++
Subjt:  KTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR

Arabidopsis top hitse value%identityAlignment
AT1G14600.1 Homeodomain-like superfamily protein1.0e-2171.64Show/hide
Query:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR
        G VR Y+RS  PRLRWTP+LH SF+ A+  LGG  KATPKLVL++MDVKGL+ISHVKSHLQMYR  R
Subjt:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR

AT2G02060.1 Homeodomain-like superfamily protein5.5e-2070.97Show/hide
Query:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYR
        VR Y+RS  PRLRWTP LH  F+ A++ LGG  +ATPKLVL++MDVKGL+ISHVKSHLQMYR
Subjt:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYR

AT2G38300.1 myb-like HTH transcriptional regulator family protein1.1e-2067.16Show/hide
Query:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGD
        VR Y+RSK PRLRWTP LH  F+ A++ LGG ++ATPKLV Q+M++KGLSI+HVKSHLQMYRS + D
Subjt:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGD

AT2G40260.1 Homeodomain-like superfamily protein1.2e-2273.91Show/hide
Query:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGD
        G VR Y RSKTPRLRWTP+LH  FL A++ LGG  +ATPKLVLQLM+VKGLSI+HVKSHLQMYRS + D
Subjt:  GVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGD

AT2G42660.1 Homeodomain-like superfamily protein2.9e-2172.31Show/hide
Query:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR
        VRQYIRS  PRLRWTP LH SF+ A+Q LGG  +ATPKLVL++M++KGLSI+HVKSHLQMYRS +
Subjt:  VRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTGTTGTTAGACAGTACATTAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCATAACTCTTTCCTTCTTGCCATTCAATCCCTTGGTGGCCTTCA
AAAGGCAACTCCCAAGCTTGTGCTTCAGTTGATGGATGTGAAAGGTCTCTCAATATCACATGTTAAGAGTCATCTTCAGATGTATAGAAGTATGAGAGGTGACTTGGGAC
GACATGCTGAAAGAAGTAGAAAGCTTTGCGTTGAAGAAGAAAATAAGTATGTTGATAGATTGGGGAAATTTTGCATTGGTAGAAGAGAGAAAAGGAGGGATGAGAAAAAG
GAGGAAGAAAGGGAAGGAATATATGAGACAGAATCAAATCTTTATGCAAATGATTATGATGTGAAGGAGGTGACAAATAAAGAGGAACAAAAAGCTAAGACCATGGGACA
TAGTAAAGACAATAAGAATGGAGAAAGAGTAGTTGCAGATAAATTAGAATTTGATCGACTGTCATTATCTCTTTCTCTACAACCAACCAACCCTGCCATTGCTCCTTTCC
CCGACATAGGTGACATTTTTTTCTCAAGCTCTCGTAACAAAAAATTTCTGATTCAGAAACATGAGGATATCGACTTAGACTTATCCATATCGCTT
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAACCACATTCAAATCCTTTTTGAAAGAAAAATGAGAGGTGTTGTTAGACAGTACATTAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCATAAC
TCTTTCCTTCTTGCCATTCAATCCCTTGGTGGCCTTCAAAAGGCAACTCCCAAGCTTGTGCTTCAGTTGATGGATGTGAAAGGTCTCTCAATATCACATGTTAAGAGTCA
TCTTCAGATGTATAGAAGTATGAGAGGTGACTTGGGACGACATGCTGAAAGAAGTAGAAAGCTTTGCGTTGAAGAAGAAAATAAGTATGTTGATAGATTGGGGAAATTTT
GCATTGGTAGAAGAGAGAAAAGGAGGGATGAGAAAAAGGAGGAAGAAAGGGAAGGAATATATGAGACAGAATCAAATCTTTATGCAAATGATTATGATGTGAAGGAGGTG
ACAAATAAAGAGGAACAAAAAGCTAAGACCATGGGACATAGTAAAGACAATAAGAATGGAGAAAGAGTAGTTGCAGATAAATTAGAATTTGATCGACTGTCATTATCTCT
TTCTCTACAACCAACCAACCCTGCCATTGCTCCTTTCCCCGACATAGGTGACATTTTTTTCTCAAGCTCTCGTAACAAAAAATTTCTGATTCAGAAACATGAGGATATCG
ACTTAGACTTATCCATATCGCTT
Protein sequenceShow/hide protein sequence
MRGVVRQYIRSKTPRLRWTPQLHNSFLLAIQSLGGLQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDLGRHAERSRKLCVEEENKYVDRLGKFCIGRREKRRDEKK
EEEREGIYETESNLYANDYDVKEVTNKEEQKAKTMGHSKDNKNGERVVADKLEFDRLSLSLSLQPTNPAIAPFPDIGDIFFSSSRNKKFLIQKHEDIDLDLSISL