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Lsi11G000890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G000890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L18
Genome locationchr11:933760..934104
RNA-Seq ExpressionLsi11G000890
SyntenyLsi11G000890
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]6.2e-4995.61Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022145949.1 uncharacterized protein LOC111015286 [Momordica charantia]2.1e-4995.61Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+ AR+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]8.2e-4995.61Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]1.8e-4894.74Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]2.4e-4893.86Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+  RLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L182.0e-4893.86Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+K  RL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152861.0e-4995.61Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+ AR+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620254.0e-4995.61Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691421.5e-4892.98Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679408.8e-4994.74Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L181.3e-0944.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L KG+ AV       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

A8IAP8 50S ribosomal protein L181.0e-0943.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T+K++ AQ+I         AASS EK LR S+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B6EPU1 50S ribosomal protein L181.3e-0945.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B7VLE1 50S ribosomal protein L181.0e-0943.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

P52863 50S ribosomal protein L185.9e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein8.2e-0727.72Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K ++  + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT1G08845.2 Ribosomal L18p/L5e family protein8.2e-0727.72Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K ++  + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G20230.1 Ribosomal L18p/L5e family protein4.7e-1031.68Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R ++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G22450.1 Ribosomal L18p/L5e family protein2.0e-0530.21Show/hide
Query:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKL
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  K  GK++ V+ ++ + G+ +
Subjt:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKL

AT5G27820.1 Ribosomal L18p/L5e family protein1.0e-4176.32Show/hide
Query:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP V+  RL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCCCCTCCAGTTAAGACAGCAAGATTAACCCAATATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAATAAGTATGTGAGTGCCCAGGTGATCCACTC
CGAAACGGCCACCGTTGCTTCGGCTGCAAGTTCACAGGAGAAGGCACTGCGATTGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTGAAAGCTGTTGTTGATTCTGTGAGAGAAGCAGGA
ATTAAGCTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCCCCTCCAGTTAAGACAGCAAGATTAACCCAATATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAATAAGTATGTGAGTGCCCAGGTGATCCACTC
CGAAACGGCCACCGTTGCTTCGGCTGCAAGTTCACAGGAGAAGGCACTGCGATTGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTGAAAGCTGTTGTTGATTCTGTGAGAGAAGCAGGA
ATTAAGCTGCTTTGA
Protein sequenceShow/hide protein sequence
MVIPPPVKTARLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
IKLL