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Lsi11G000950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G000950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionleucine-rich repeat extensin-like protein 2
Genome locationchr11:987314..987745
RNA-Seq ExpressionLsi11G000950
SyntenyLsi11G000950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054146.1 AUX/IAA protein [Cucumis melo var. makuwa]4.2e-2655.48Show/hide
Query:  MLKAAKKKLK-FWS--KNKKPKKTHNHYHFPPPPCHCCTCNCSSAT----QPSAPPLPPWL-DDRTFLPPSTES--EQLDRAEITAPLVASQ-SYQQYLA
        MLKA KKKLK  WS  K KKP KT  + +      +CC+C+CSS++    QPSAPPLPPWL +D TFLPP T+S  E  DRA+    +V +Q SYQQYL 
Subjt:  MLKAAKKKLK-FWS--KNKKPKKTHNHYHFPPPPCHCCTCNCSSAT----QPSAPPLPPWL-DDRTFLPPSTES--EQLDRAEITAPLVASQ-SYQQYLA

Query:  PEPVYGVPIIVQTESRR-EKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP
         EPVYGVPIIV+TESRR +KW+            IKL  CFCPCF I Q  YYIP
Subjt:  PEPVYGVPIIVQTESRR-EKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP

KAG6601672.1 hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4769.72Show/hide
Query:  MLKAAKKKLKFWSKNKKPKKTHNHYHF---PPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVP
        MLKAAKKKLKFWS++KK KK  +   F   PPPPCHCCTC+CSSA QPSAPPLPPWLDDR F PP    E  + AEI APLVA+  YQQY+ P+PVYGVP
Subjt:  MLKAAKKKLKFWSKNKKPKKTHNHYHF---PPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVP

Query:  IIVQTESRREKWRS--FRVSGCIGDLGIKLIGCFCPCFRIPQ
        IIVQT+SRR+  RS  F VSGC+GDLGI++IGCFCPCFR P+
Subjt:  IIVQTESRREKWRS--FRVSGCIGDLGIKLIGCFCPCFRIPQ

KGN49708.1 hypothetical protein Csa_018344 [Cucumis sativus]4.6e-2553.99Show/hide
Query:  MLKAAKKKLK-FWS------KNKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPSAPPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ
        MLKA KKKLK  WS      K KKP +T  N Y +      CC C+CSS+T      QPSAPPLP WL+D  TFLPPST+S  E  D A E+  PLVA+Q
Subjt:  MLKAAKKKLK-FWS------KNKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPSAPPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ

Query:  -SYQQYLAPEPVYGVPIIVQTES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP
         SYQQYL  EPVYGVPIIV+TES R +KW+            IKL  C CPCF I Q  YY+P
Subjt:  -SYQQYLAPEPVYGVPIIVQTES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP

XP_022155153.1 uncharacterized protein LOC111022295 [Momordica charantia]1.9e-2651.7Show/hide
Query:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCS-SATQPSAPPLPPWLDDRTFL----PPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYG
        MLKAA KKLKFWSK+KK +KT +  + PPPP   C+C+CS SA +PSAPPLPPWLDDRT L    PP+    +           A+ SYQQY AP PVYG
Subjt:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCS-SATQPSAPPLPPWLDDRTFL----PPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYG

Query:  VPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQPYYIP
        +P IV+  S R + RS        DLG +LI CFCPC  + + YY+P
Subjt:  VPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQPYYIP

XP_022933064.1 uncharacterized protein LOC111439771 [Cucurbita moschata]4.8e-4669.78Show/hide
Query:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIV
        MLKAAKKKLKFWS++KK KK  N   F PPPCHCCTC+CSSA QPSAPPLPPWLDDR F P    SE  + AEI APLVA+  YQ Y+ P+PVYGVPIIV
Subjt:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIV

Query:  QTESRREKWRS--FRVSGCIGDLGIKLIGCFCPCFRIPQ
        QT+SRR+  RS  F VSGC+G+LGI++IGCFCPCFR P+
Subjt:  QTESRREKWRS--FRVSGCIGDLGIKLIGCFCPCFRIPQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJG0 Uncharacterized protein2.2e-2553.99Show/hide
Query:  MLKAAKKKLK-FWS------KNKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPSAPPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ
        MLKA KKKLK  WS      K KKP +T  N Y +      CC C+CSS+T      QPSAPPLP WL+D  TFLPPST+S  E  D A E+  PLVA+Q
Subjt:  MLKAAKKKLK-FWS------KNKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPSAPPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ

Query:  -SYQQYLAPEPVYGVPIIVQTES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP
         SYQQYL  EPVYGVPIIV+TES R +KW+            IKL  C CPCF I Q  YY+P
Subjt:  -SYQQYLAPEPVYGVPIIVQTES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP

A0A5A7UIP5 AUX/IAA protein2.0e-2655.48Show/hide
Query:  MLKAAKKKLK-FWS--KNKKPKKTHNHYHFPPPPCHCCTCNCSSAT----QPSAPPLPPWL-DDRTFLPPSTES--EQLDRAEITAPLVASQ-SYQQYLA
        MLKA KKKLK  WS  K KKP KT  + +      +CC+C+CSS++    QPSAPPLPPWL +D TFLPP T+S  E  DRA+    +V +Q SYQQYL 
Subjt:  MLKAAKKKLK-FWS--KNKKPKKTHNHYHFPPPPCHCCTCNCSSAT----QPSAPPLPPWL-DDRTFLPPSTES--EQLDRAEITAPLVASQ-SYQQYLA

Query:  PEPVYGVPIIVQTESRR-EKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP
         EPVYGVPIIV+TESRR +KW+            IKL  CFCPCF I Q  YYIP
Subjt:  PEPVYGVPIIVQTESRR-EKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP

A0A5N6QN08 Uncharacterized protein1.6e-2343.21Show/hide
Query:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLD-----DRTFLPPS----------------------TESEQLDRAE
        M+KA  KKLKFWS+ K+ KKT + Y+ PPPPCHC   +C S TQPSAPPLPPWLD     D+    P+                      TE+  +    
Subjt:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLD-----DRTFLPPS----------------------TESEQLDRAE

Query:  ITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI
        +    V++ SYQQY+AP PVYG+P++V   +RRE+   F   GC+ + GI L  CFCPC  I
Subjt:  ITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI

A0A6J1EYP6 uncharacterized protein LOC1114397712.3e-4669.78Show/hide
Query:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIV
        MLKAAKKKLKFWS++KK KK  N   F PPPCHCCTC+CSSA QPSAPPLPPWLDDR F P    SE  + AEI APLVA+  YQ Y+ P+PVYGVPIIV
Subjt:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIV

Query:  QTESRREKWRS--FRVSGCIGDLGIKLIGCFCPCFRIPQ
        QT+SRR+  RS  F VSGC+G+LGI++IGCFCPCFR P+
Subjt:  QTESRREKWRS--FRVSGCIGDLGIKLIGCFCPCFRIPQ

A0A6P6GE81 formin-like protein 58.0e-2347.06Show/hide
Query:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPP-----------CHCCTCNC-SSATQPSAPPLPP-WLDD----RTFL-----PPSTES--------EQLD
        M+KA  KKLKFWS+ K+ KKTH  Y+ PPPP            HCC C+C SS+TQPSAPPLPP W D      TFL     PP+ ES        E++ 
Subjt:  MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPP-----------CHCCTCNC-SSATQPSAPPLPP-WLDD----RTFL-----PPSTES--------EQLD

Query:  RAEITAPLV-----ASQSYQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI
            T PL      ++ SYQQY+ P PVYG+P  V   SRREK  S  + GC+ + GI LI CF PC+RI
Subjt:  RAEITAPLV-----ASQSYQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24265.1 unknown protein6.9e-1132.43Show/hide
Query:  KKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSA-----TQPSAPPLPPWLDD-RTFLPPSTES----------EQLDRAEITAPLVAS-------QS
        KKL FWS+ K+ +K        P   H C+C  SS       +P+APPLP W D+ R+  PP T S          +Q +      PL++        QS
Subjt:  KKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSA-----TQPSAPPLPPWLDD-RTFLPPSTES----------EQLDRAEITAPLVAS-------QS

Query:  YQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCP
        YQQY+ P P   V  +    ++    RS  + GC+ +L   L+ CF P
Subjt:  YQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTG
CAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAA
TCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGA
AGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTG
CAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAA
TCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGA
AGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA
Protein sequenceShow/hide protein sequence
MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWR
SFRVSGCIGDLGIKLIGCFCPCFRIPQPYYIPK