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Lsi11G001040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001040
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr11:1128661..1133119
RNA-Seq ExpressionLsi11G001040
SyntenyLsi11G001040
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN51411.1 hypothetical protein Csa_007923 [Cucumis sativus]3.0e-2249.01Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKSG+SSSSVEALRN GEGIAS+LSS DHSR LL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKD
                QVVSIWTCSKLCAVCFV GVVVGYSLKRCVNRW+SKLLRRLKD
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKD

XP_022956291.1 uncharacterized protein LOC111458016 [Cucurbita moschata]8.4e-1746.71Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKS    SSVEALRN GEGIASALSSSD SRLLL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
                QVVSI TCSKLC +CFVAGVVVGYSLKR VNRWVSKLLRRLK+D
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

XP_022974252.1 uncharacterized protein LOC111472885 [Cucurbita maxima]9.9e-1846.71Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKS    SSVEALR+ GEGIASALSSSD SRLLL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
                QVVSI TCSKLC +CFVAGV+VGYSLKRCVNRWVSKLLRRLKDD
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

XP_023540347.1 uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo]2.9e-1747.37Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKS    SSVEALRN GEGIASALSSSD SRLLL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
                QVVSI TCSKLC +CFVAGVVVGYSLKR VNRWVSKLLRRLKDD
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

XP_038893067.1 uncharacterized protein LOC120081950 [Benincasa hispida]9.3e-2451.97Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKSGVSSSSVE LRN GEGIASALSSSD SRLLL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
                QVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

TrEMBL top hitse value%identityAlignment
A0A0A0KUK2 Uncharacterized protein1.4e-2249.01Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKSG+SSSSVEALRN GEGIAS+LSS DHSR LL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKD
                QVVSIWTCSKLCAVCFV GVVVGYSLKRCVNRW+SKLLRRLKD
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKD

A0A6J1GW53 uncharacterized protein LOC1114580164.1e-1746.71Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKS    SSVEALRN GEGIASALSSSD SRLLL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
                QVVSI TCSKLC +CFVAGVVVGYSLKR VNRWVSKLLRRLK+D
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

A0A6J1I9S5 uncharacterized protein LOC1114728854.8e-1846.71Show/hide
Query:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS
        MKS    SSVEALR+ GEGIASALSSSD SRLLL+TRP R                                                            
Subjt:  MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKS

Query:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
                QVVSI TCSKLC +CFVAGV+VGYSLKRCVNRWVSKLLRRLKDD
Subjt:  MSSIQDKWQVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

A0A6P4NRQ5 uncharacterized protein LOC1084691381.5e-1179.55Show/hide
Query:  QVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
        QVVS+WTCSKLC  CFVAG++VGYSLKR V RW SKLL+RLKDD
Subjt:  QVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

A0A6P5XUK1 uncharacterized protein LOC1112862756.7e-1279.55Show/hide
Query:  QVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
        QVVS+WTCSKLCA+CFVAG+VVGY+LKR V RW S+LL+RLKDD
Subjt:  QVVSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19240.1 unknown protein1.6e-1380.95Show/hide
Query:  VSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
        VS+WTCSKLCAV FVAGV VGY+LKR V RW SKLLRR+KDD
Subjt:  VSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCAGGGGTTTCATCTTCTTCAGTTGAAGCTTTGAGGAACGGAGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCACTCTCGTTTGCTGCTTTCCACTCG
ACCTTCCAGGCACTTCCTTCTCTCTCTTCTTTGCCTTCATTATCTTTGGATACAACCTTCGTACGCCTTGATTGGTGTCGGGGCTGAAATCACTCCCTTCTGTGTGAATC
GATTCGTTTGCTCACTACTGACTCCCGCTACACAAGACAACATCCTAGGCAAATGCCTTCTTTCTCATTGGTTCAAAAGTATGAGCAGCATCCAAGATAAATGGCAAGTG
GTGTCAATATGGACTTGTTCGAAGCTGTGTGCTGTTTGCTTTGTCGCGGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTTAATCGATGGGTTTCCAAGCTATTGAG
GAGATTGAAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
TTTTGATCATATGAGAATGGAGTCAATTTTGGGAGTAAACCCTAAATGAGGGGCGTAAACCCCGTGTGGTTTAGGTTTTGGTTCGCTCGATCAAATTCGGTAGTGAGTTT
GAGATAGTGCAGAAATGAAATCAGGGGTTTCATCTTCTTCAGTTGAAGCTTTGAGGAACGGAGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCACTCTCGTTTG
CTGCTTTCCACTCGACCTTCCAGGCACTTCCTTCTCTCTCTTCTTTGCCTTCATTATCTTTGGATACAACCTTCGTACGCCTTGATTGGTGTCGGGGCTGAAATCACTCC
CTTCTGTGTGAATCGATTCGTTTGCTCACTACTGACTCCCGCTACACAAGACAACATCCTAGGCAAATGCCTTCTTTCTCATTGGTTCAAAAGTATGAGCAGCATCCAAG
ATAAATGGCAAGTGGTGTCAATATGGACTTGTTCGAAGCTGTGTGCTGTTTGCTTTGTCGCGGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTTAATCGATGGGTT
TCCAAGCTATTGAGGAGATTGAAAGATGATTGATGTGTCCATCCATCCCATTGTTCTGATTGGCCAATTGCTGTAAAAATTTTCGCTTCAGCGGGAGAGTCACTAATGTC
AATTGCAAATTTTGCATGTC
Protein sequenceShow/hide protein sequence
MKSGVSSSSVEALRNGGEGIASALSSSDHSRLLLSTRPSRHFLLSLLCLHYLWIQPSYALIGVGAEITPFCVNRFVCSLLTPATQDNILGKCLLSHWFKSMSSIQDKWQV
VSIWTCSKLCAVCFVAGVVVGYSLKRCVNRWVSKLLRRLKDD