; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G001080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontapetum determinant 1
Genome locationchr11:1158188..1158758
RNA-Seq ExpressionLsi11G001080
SyntenyLsi11G001080
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7037266.1 unnamed protein product [Microthlaspi erraticum]1.7e-2757.55Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVFKRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  CIKSQI
        C +  +
Subjt:  CIKSQI

RYR31335.1 hypothetical protein Ahy_B01g056139 [Arachis hypogaea]4.8e-2745.93Show/hide
Query:  MVKAAASCSLFGASILFHLLLLASFDCTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDD
        +VK + + S+   S+ F L +L   +     + + C K  IA+  GE     +GIP+Y V+I N+C N+C+I ++ L CG FSSA+LINPR+F+R+  DD
Subjt:  MVKAAASCSLFGASILFHLLLLASFDCTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDD

Query:  CLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKCI
        CL+N+GRP+PP+T +SFQYA TF +PL+V+SL C+
Subjt:  CLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKCI

RZC59460.1 hypothetical protein C5167_006762 [Papaver somniferum]1.3e-2760.4Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

XP_026379521.1 protein TAPETUM DETERMINANT 1-like [Papaver somniferum]1.3e-2760.4Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

XP_026382275.1 protein TAPETUM DETERMINANT 1-like [Papaver somniferum]1.7e-2760.4Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

TrEMBL top hitse value%identityAlignment
A0A1J3EQ76 Uncharacterized protein (Fragment)1.8e-2760.4Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVFKRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

A0A1J3GVG9 Uncharacterized protein (Fragment)1.8e-2760.4Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVFKRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

A0A1J3JZ23 Uncharacterized protein (Fragment)1.8e-2760.4Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVFKRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

A0A4Y7JHE6 Uncharacterized protein6.1e-2860.4Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

A0A6D2JJ26 Ribosomal_S5_C domain-containing protein8.0e-2857.55Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVFKRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  CIKSQI
        C +  +
Subjt:  CIKSQI

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058355.7e-0730.1Show/hide
Query:  CTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRI--AVDDCLINNGRPIPPSTTLSFQYATTFE
        C G + E    +  +  R+G+          + VE+ N+C   C I +L LKC  F  + L++P   + +  +  +C++N+G P+ P  TLSF Y+ T +
Subjt:  CTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRI--AVDDCLINNGRPIPPSTTLSFQYATTFE

Query:  FPL
        F L
Subjt:  FPL

Q1G3T1 TPD1 protein homolog 11.1e-2647.41Show/hide
Query:  LLASFDCTGGT--LEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQ
        LL S D   GT  + + C K+ I + QG      +G+P+Y VEI N C ++C I ++H+ CG FSS +L+NPRVF+R+  DDCL+N+G+P+ P  +LSFQ
Subjt:  LLASFDCTGGT--LEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQ

Query:  YATTFEFPLSVSSLKC
        YA +F +PLSV+S+ C
Subjt:  YATTFEFPLSVSSLKC

Q2QR54 TPD1 protein homolog 1A6.5e-1940.78Show/hide
Query:  NSIAVRQGEGGRQFNGIPTYMVEITNQCR------NNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSL
        + IA+ QG      +G+P Y V++ N+C         C I  +H++CG FSS  L++PRVF+R+  DDCL+N+GRP+    T+SF+Y  +F + LSVS  
Subjt:  NSIAVRQGEGGRQFNGIPTYMVEITNQCR------NNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSL

Query:  KCI
         C+
Subjt:  KCI

Q6TLJ2 Protein TAPETUM DETERMINANT 17.0e-2959.41Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC+   I V Q       NGIP YMVEITNQC + C I  +H+ CG FSSAKLINPRVFKRI  DDCL+NNG+P+P  +TLSF YA TF + LSV+ + 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

Q8S6P9 TPD1 protein homolog 1B4.1e-2142.57Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        + C + ++ V Q       +GIPTY VEI N C   CT+YD+H+ CG F+SA+L++P  F+RI  +DCL+  G  + PS  +SFQY+ +F +PL+V+++ 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein4.1e-0830.1Show/hide
Query:  CTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRI--AVDDCLINNGRPIPPSTTLSFQYATTFE
        C G + E    +  +  R+G+          + VE+ N+C   C I +L LKC  F  + L++P   + +  +  +C++N+G P+ P  TLSF Y+ T +
Subjt:  CTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRI--AVDDCLINNGRPIPPSTTLSFQYATTFE

Query:  FPL
        F L
Subjt:  FPL

AT1G32583.1 FUNCTIONS IN: molecular_function unknown7.9e-2847.41Show/hide
Query:  LLASFDCTGGT--LEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQ
        LL S D   GT  + + C K+ I + QG      +G+P+Y VEI N C ++C I ++H+ CG FSS +L+NPRVF+R+  DDCL+N+G+P+ P  +LSFQ
Subjt:  LLASFDCTGGT--LEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQ

Query:  YATTFEFPLSVSSLKC
        YA +F +PLSV+S+ C
Subjt:  YATTFEFPLSVSSLKC

AT4G24972.1 tapetum determinant 14.9e-3059.41Show/hide
Query:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK
        EKC+   I V Q       NGIP YMVEITNQC + C I  +H+ CG FSSAKLINPRVFKRI  DDCL+NNG+P+P  +TLSF YA TF + LSV+ + 
Subjt:  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLK

Query:  C
        C
Subjt:  C


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAGGCTGCTGCAAGTTGTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTGATTGTACTGGTGGAACATTAGAGGAAAAATGTGA
AAAGAATTCGATAGCAGTAAGGCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATGGTGGAGATAACAAACCAATGCCGGAACAATTGCACCATCTACG
ATCTTCATTTGAAATGTGGATCCTTCAGCTCAGCCAAATTAATAAACCCTCGCGTCTTCAAGCGCATTGCCGTCGACGATTGCCTTATCAACAATGGAAGACCAATCCCT
CCGTCCACTACTCTTTCTTTTCAATATGCTACTACTTTTGAGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCAAATCTCAAATTTGA
mRNA sequenceShow/hide mRNA sequence
GTTGCGATGGTTAAGGCTGCTGCAAGTTGTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTGATTGTACTGGTGGAACATTAGAGGAAAA
ATGTGAAAAGAATTCGATAGCAGTAAGGCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATGGTGGAGATAACAAACCAATGCCGGAACAATTGCACCA
TCTACGATCTTCATTTGAAATGTGGATCCTTCAGCTCAGCCAAATTAATAAACCCTCGCGTCTTCAAGCGCATTGCCGTCGACGATTGCCTTATCAACAATGGAAGACCA
ATCCCTCCGTCCACTACTCTTTCTTTTCAATATGCTACTACTTTTGAGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCAAATCTCAAATTTGAATAATGGAGAATAA
CTTTAAGATT
Protein sequenceShow/hide protein sequence
MVKAAASCSLFGASILFHLLLLASFDCTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIP
PSTTLSFQYATTFEFPLSVSSLKCIKSQI