; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G001100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001100
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionStructural maintenance of chromosomes protein
Genome locationchr11:1186062..1187256
RNA-Seq ExpressionLsi11G001100
SyntenyLsi11G001100
Gene Ontology termsGO:0007076 - mitotic chromosome condensation (biological process)
GO:0051321 - meiotic cell cycle (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005694 - chromosome (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR003395 - RecF/RecN/SMC, N-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054212.1 structural maintenance of chromosomes protein 4 [Cucumis melo var. makuwa]1.8e-6793.66Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYE VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

XP_008460572.1 PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 4 [Cucumis melo]1.8e-6793.66Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYE VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

XP_011655432.1 structural maintenance of chromosomes protein 4 [Cucumis sativus]1.8e-6793.66Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYE VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

XP_022149786.1 structural maintenance of chromosomes protein 4 [Momordica charantia]1.7e-6590.85Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLE ASVSVHFQEIVDLDDGAYE VPG+DFVITRAAFRDNSSKYYIN+R SNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

XP_038876535.1 structural maintenance of chromosomes protein 4 isoform X2 [Benincasa hispida]2.6e-6691.55Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNH+NLESASVSVHFQEI+DLDDGAYE VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDES+KQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

TrEMBL top hitse value%identityAlignment
A0A0A0KP68 SMC_N domain-containing protein8.8e-6893.66Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYE VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

A0A1S3CCB7 Structural maintenance of chromosomes protein8.8e-6893.66Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYE VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

A0A5A7UEJ3 Structural maintenance of chromosomes protein 48.8e-6893.66Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYE VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

A0A6J1D9G1 Structural maintenance of chromosomes protein8.2e-6690.85Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNLE ASVSVHFQEIVDLDDGAYE VPG+DFVITRAAFRDNSSKYYIN+R SNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

A0A6J1GF37 Structural maintenance of chromosomes protein1.8e-6590.85Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNST+HQNLESASVSVHF+EIVD D+G YEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGT KYVEMIDESNKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

SwissProt top hitse value%identityAlignment
P50532 Structural maintenance of chromosomes protein 42.7e-3451.52Show/hide
Query:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGEVEQV
        ++R  K+S LIHNS  H++++S +V VHFQ+I+D +   +EV+P S+F ++R A++DNSS Y+I+ + + F +V   L+  GIDLD+NRFLILQGEVEQ+
Subjt:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGEVEQV

Query:  SLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMI
        ++MKPK    HD G LEYLEDIIG+ +  E I
Subjt:  SLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMI

Q54LV0 Structural maintenance of chromosomes protein 41.4e-3858.04Show/hide
Query:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDL-DDGAYEVVPGSDFVITRAA-----FRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQ
        Q+RLNK+SELIHNS NH+NL +  VSVHFQEI+DL  +  YEVV GS+FV+TR A      +D  SKYY+N++     ++   LK KGIDLDNNRFLILQ
Subjt:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDL-DDGAYEVVPGSDFVITRAA-----FRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQ

Query:  GEVEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNK
        GEVEQ+++MKPK   P + G LEYLEDIIG+ KY+  I+ ++K
Subjt:  GEVEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNK

Q9ERA5 Structural maintenance of chromosomes protein 4 (Fragment)1.6e-3452.27Show/hide
Query:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGEVEQV
        ++R  K+S LIHNS  H++++S +V VHFQ+I+D +   YEV+P S+F ++R A+RDN+S Y+I+ +   F +V   L+  GIDLD+NRFLILQGEVEQ+
Subjt:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGEVEQV

Query:  SLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMI
        ++MKPK    HD G LEYLEDIIG  +  E I
Subjt:  SLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMI

Q9FJL0 Structural maintenance of chromosomes protein 42.5e-6484.51Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNL+SA VSV F+EI+DL++G YE VPGSDF+ITR AFRDNSSKYYIN R+SNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGTNKYVE IDE NKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

Q9NTJ3 Structural maintenance of chromosomes protein 44.7e-3452.27Show/hide
Query:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGEVEQV
        ++R  K+S LIHNS  H++++S +V VHFQ+I+D +   YEV+P S+F ++R A RDN+S Y+I+ +   F +V   L+  GIDLD+NRFLILQGEVEQ+
Subjt:  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGEVEQV

Query:  SLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMI
        ++MKPK    HD G LEYLEDIIG  +  E I
Subjt:  SLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMI

Arabidopsis top hitse value%identityAlignment
AT3G47460.1 Structural maintenance of chromosomes (SMC) family protein5.2e-0425.56Show/hide
Query:  LKNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQG
        + N  Q+R   + EL++       +  A+VSV F    + +         S+  +TR       +KY IN + +   +V        ++++N  FLI+QG
Subjt:  LKNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQG

Query:  EVEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKY
         + +V  MKP       +  L  LE+  GT  Y
Subjt:  EVEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKY

AT5G48600.1 structural maintenance of chromosome 31.8e-6584.51Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNL+SA VSV F+EI+DL++G YE VPGSDF+ITR AFRDNSSKYYIN R+SNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGTNKYVE IDE NKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

AT5G48600.2 structural maintenance of chromosome 31.8e-6584.51Show/hide
Query:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE
        K   QMRLNKVSELIHNSTNHQNL+SA VSV F+EI+DL++G YE VPGSDF+ITR AFRDNSSKYYIN R+SNFTEVTKKLKGKG+DLDNNRFLILQGE
Subjt:  KNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQGE

Query:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ
        VEQ+SLMKPKA GPHD GFLEYLEDIIGTNKYVE IDE NKQ
Subjt:  VEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ

AT5G62410.1 structural maintenance of chromosomes 24.0e-0426.87Show/hide
Query:  LKNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIV-DLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQ
        + N  Q+R   + EL++       +  A+VSV F           YE  P  +  +TR       +KY IN + +  ++V        ++++N  FLI+Q
Subjt:  LKNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIV-DLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQ

Query:  GEVEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKY
        G + +V  MKP          L  LE+  GT  Y
Subjt:  GEVEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGCTCTACTATACACGAGCCAACTTGGAGCAACTAAAAAATGATGTGCAGATGCGTCTGAACAAAGTCTCAGAGCTAATTCATAATTCCACCAATCACCAGAATTTAGA
GAGTGCAAGCGTTTCAGTTCACTTCCAAGAAATAGTTGATCTGGATGATGGAGCATATGAAGTTGTTCCAGGAAGTGACTTTGTTATAACCCGGGCTGCCTTTCGTGATA
ACTCTTCTAAATATTACATTAATAATCGTGCAAGTAACTTCACTGAAGTTACCAAAAAATTGAAGGGTAAAGGAATTGACTTGGACAACAACCGCTTTTTAATTCTTCAG
GGTGAAGTTGAGCAGGTTTCACTGATGAAGCCAAAAGCTCATGGACCTCACGATGTGGGCTTTCTTGAATATCTGGAGGATATAATTGGAACCAACAAATATGTTGAAAT
GATTGACGAGTCAAACAAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
TTGCTCTACTATACACGAGCCAACTTGGAGCAACTAAAAAATGATGTGCAGATGCGTCTGAACAAAGTCTCAGAGCTAATTCATAATTCCACCAATCACCAGAATTTAGA
GAGTGCAAGCGTTTCAGTTCACTTCCAAGAAATAGTTGATCTGGATGATGGAGCATATGAAGTTGTTCCAGGAAGTGACTTTGTTATAACCCGGGCTGCCTTTCGTGATA
ACTCTTCTAAATATTACATTAATAATCGTGCAAGTAACTTCACTGAAGTTACCAAAAAATTGAAGGGTAAAGGAATTGACTTGGACAACAACCGCTTTTTAATTCTTCAG
GGTGAAGTTGAGCAGGTTTCACTGATGAAGCCAAAAGCTCATGGACCTCACGATGTGGGCTTTCTTGAATATCTGGAGGATATAATTGGAACCAACAAATATGTTGAAAT
GATTGACGAGTCAAACAAGCAGTGA
Protein sequenceShow/hide protein sequence
LLYYTRANLEQLKNDVQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEVVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGIDLDNNRFLILQ
GEVEQVSLMKPKAHGPHDVGFLEYLEDIIGTNKYVEMIDESNKQ