; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G001250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING/U-box superfamily protein
Genome locationchr11:1420083..1421653
RNA-Seq ExpressionLsi11G001250
SyntenyLsi11G001250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140426.1 uncharacterized protein LOC101206682 isoform X1 [Cucumis sativus]4.1e-4690.29Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN DLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPAN++SCP QPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        SCS
Subjt:  SCS

XP_023511739.1 uncharacterized protein LOC111776223 [Cucurbita pepo subsp. pepo]2.0e-4590.29Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN D+AIDDGIHRGVQYPFA NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        S S
Subjt:  SCS

XP_031741483.1 uncharacterized protein LOC101206682 isoform X3 [Cucumis sativus]4.1e-4690.29Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN DLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPAN++SCP QPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        SCS
Subjt:  SCS

XP_038891861.1 uncharacterized protein LOC120081226 isoform X1 [Benincasa hispida]2.4e-4691.18Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +PI+ L +EN D+ IDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SC
         C
Subjt:  SC

XP_038891864.1 uncharacterized protein LOC120081226 isoform X2 [Benincasa hispida]2.4e-4691.18Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +PI+ L +EN D+ IDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SC
         C
Subjt:  SC

TrEMBL top hitse value%identityAlignment
A0A1S3C3S2 uncharacterized protein LOC103496673 isoform X11.1e-4488.35Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN DLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPAN++S P QPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        +CS
Subjt:  SCS

A0A5A7SSH6 RING/U-box superfamily protein isoform 11.1e-4488.35Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN DLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPAN++S P QPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        +CS
Subjt:  SCS

A0A5D3CRE0 RING/U-box superfamily protein isoform 11.1e-4488.35Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN DLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPAN++S P QPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        +CS
Subjt:  SCS

A0A6J1FWI9 uncharacterized protein LOC1114475669.9e-4690.29Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN D+AIDDGIHRGVQYPFA NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        S S
Subjt:  SCS

A0A6J1JTN9 uncharacterized protein LOC1114874109.9e-4690.29Show/hide
Query:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
        +P++ L +EN D+AIDDGIHRGVQYPFA NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH
Subjt:  EPIKTL-QENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQH

Query:  SCS
        S S
Subjt:  SCS

SwissProt top hitse value%identityAlignment
Q58FY4 U-box domain-containing protein 631.1e-1451.61Show/hide
Query:  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKI
        RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL KI
Subjt:  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKI

Q6DBN5 U-box domain-containing protein 623.5e-1661.4Show/hide
Query:  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK
        +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Subjt:  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK

Arabidopsis top hitse value%identityAlignment
AT2G40640.1 RING/U-box superfamily protein8.1e-1651.61Show/hide
Query:  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKI
        RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL KI
Subjt:  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKI

AT2G40640.2 RING/U-box superfamily protein5.1e-1055.81Show/hide
Query:  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLL
        RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGW  L
Subjt:  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLL

AT3G19895.1 RING/U-box superfamily protein1.8e-3178.95Show/hide
Query:  ENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILN
        EN D A DDG+HR V YPFA NEKVLIKGNRRTPEKFVGKEA++TSQCLNGWYLLKI+ +G+NVRLQYRSL+K++N
Subjt:  ENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILN

AT5G05230.1 RING/U-box superfamily protein2.5e-1761.4Show/hide
Query:  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK
        +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Subjt:  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGTCTTCAAGGTTTTACGTTCAAGATATTGCTTGAAGTTGTAGTTTTTCCAATTTATGAAGAACCAATAAAAACTCTCCAGGAAAACAGTGATCTTGCC
ATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAA
GCAGTCATCACTTCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGGACTGGAGAGAATGTTAGGTTGCAATATCGCTCTCTTAGGAAGATCCTGAAC
ACGACACCAGCTAACGAGGATAGCTGTCCCTCACAGCCCCTTCAGCACAGTTGCTCATAA
mRNA sequenceShow/hide mRNA sequence
CAAATTTTATCAACGGGAAGTAGGATCTTGTGACCTCAAAATAAGAGGATTGGCTTTGGCCTCAAGTATTATCCATGCAAGATAGTTAACTAATTCTGAAGTTCC
ATGCAGGAAATTGCATCTTTCTATCTAATTATATATGTCTAAACAGTTTATATATTTTGCAACCATATTCCATCATGCATGTTGAGAAATAGGTTTAAAAGGGGT
AAGCACATCAATTTATGTGGCTTTTAGGGGTAAGCACATCAATTTATGTGGCTTTTAGATGCATTCAGACCCGCACTAGTTAGCAAGAATTTGATTGCATAGATG
TAATTTGATCAAAGACATTAAAAATTTGAACAATCTGAAAAACTTGTGTTAATACCACAAGGGATTAGAAATCAATTGATTGAATTTTTTTTCTTTCCCAACCTT
AAATTATGTCTGTTGCAACTTGAAAAGAAAATAATTCCTCGAGTTCCAGGCTACTAGCATTCCAAATAATCTTTATGAGTTGTCTTCAAGGTTTTACGTTCAAGA
TATTGCTTGAAGTTGTAGTTTTTCCAATTTATGAAGAACCAATAAAAACTCTCCAGGAAAACAGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGT
ATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATCACTTCCCAGTGTCTCAATGGCT
GGTATTTGCTAAAAATCATTGGGACTGGAGAGAATGTTAGGTTGCAATATCGCTCTCTTAGGAAGATCCTGAACACGACACCAGCTAACGAGGATAGCTGTCCCT
CACAGCCCCTTCAGCACAGTTGCTCATAAATCTATCTCACTGGTTGATGATTATTAATCCAGAGCAACAAGTAAAATTCTAATCATGGTTTTGGTCAGCAAAAGG
TTGTGGATTTGTTTGGGAGGTGATATATTTATTATCATGATTGTGCATCAAAACAGCAGCTGTTGGTCTTAGGTTTCTCTTACAGGCTTGTAAAAAAATCCTTGA
AGATGTATTTAGTTTTTCTTTCTTTTTTCTCCCTTTAGTCCTTGGAGTACCATTAAATTGTAGGCCCAAGAAAACATTTATATGTATCATTACGCTTGAGAAGAT
AAATTATATGCAAATTGAGACTGGAGGCATGGATTGTGGGCAGAGAACACTTGGCATCTCCAATTAATTAAGTTTTTTTATTGGAAGCCACTAAACTTGAAGAAG
TGTATTATTTTTTCCTCGAAAAAACTTTTGGTGAAATTCTATTATTATATTTTTCAGTGCTGTATTAATTTTTGTAACAAAATTCCAATACATTAAATAATGTGA
CTAGGATTTAAAATTCT
Protein sequenceShow/hide protein sequence
MSCLQGFTFKILLEVVVFPIYEEPIKTLQENSDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILN
TTPANEDSCPSQPLQHSCS