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Lsi11G001440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 17-like
Genome locationchr11:1597703..1598766
RNA-Seq ExpressionLsi11G001440
SyntenyLsi11G001440
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599546.1 DEAD-box ATP-dependent RNA helicase 17, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
KAG7030524.1 DEAD-box ATP-dependent RNA helicase 17 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1092.11Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFGA
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF A
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFGA
XP_022946513.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata]3.0e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
XP_022946514.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata]3.0e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
XP_022975312.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]3.0e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
TrEMBL top hitse value%identityAlignment
A0A6J1G419 DEAD-box ATP-dependent RNA helicase 17 isoform X21.5e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
A0A6J1G427 DEAD-box ATP-dependent RNA helicase 17 isoform X11.5e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
A0A6J1ICQ6 DEAD-box ATP-dependent RNA helicase 17 isoform X21.5e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
A0A6J1IGD1 DEAD-box ATP-dependent RNA helicase 17 isoform X11.5e-1094.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNAATGTGKT+AYL PIIHHLQKSDRRIQRADGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
A0A7C9CKA4 RNA helicase1.9e-1094.59Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFG
        LVNAATGTGKTIAYLAPIIHHLQK D RIQRADGTFG
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFG
SwissProt top hitse value%identityAlignment
Q0DLB9 DEAD-box ATP-dependent RNA helicase 176.5e-0869.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LV AATGTGKT+AYLAPI+H LQ  + R++R DGTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
Q7XJN0 DEAD-box ATP-dependent RNA helicase 178.5e-0869.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNA TGTGKTIAYLAP+IHHLQ    ++ R+ GTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
Q86B47 Probable ATP-dependent RNA helicase CG86119.8e-0455.88Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADG
        LV + TG+GKT+AY  P++  LQK   RIQR DG
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADG
Q9H8H2 Probable ATP-dependent RNA helicase DDX315.7e-0445.95Show/hide
Query:  SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        +LV + TG+GKT+AY  P++  LQ  + +IQR+DG +
Subjt:  SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
Arabidopsis top hitse value%identityAlignment
AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein6.1e-0969.44Show/hide
Query:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF
        LVNA TGTGKTIAYLAP+IHHLQ    ++ R+ GTF
Subjt:  LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACCAACTCCGAGTCTTGTTAATGCGGCCACAGGCACTGGCAAAACTATTGCATATTTGGCTCCAATCATCCATCACTTGCAGAAATCCGATCGTAGGATTCAACG
GGCTGATGGAACTTTTGGTGCGTTACATTAG
mRNA sequenceShow/hide mRNA sequence
TGAAAATTTAAAATGAGACATTTTTATCAATTTTCCCTCTGGCCAAAAACTCCAAAATATCCTCCTTTGTTCCACGTCGCGAGCCCATCTTCCCTACACTAACTCCTCCT
CCTCCGGCATTCACGTCTGCAGCCGCGCCGCCGCCTCTGTCATCGTCGCCGCTCTCACGTCGTTGCCATCGCCTCGGTCTGGACTCTACTTTATGCGACCAACTCCGAGT
CTTGTTAATGCGGCCACAGGCACTGGCAAAACTATTGCATATTTGGCTCCAATCATCCATCACTTGCAGAAATCCGATCGTAGGATTCAACGGGCTGATGGAACTTTTGG
TGCGTTACATTAG
Protein sequenceShow/hide protein sequence
MRPTPSLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFGALH