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Lsi11G001510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent DNA helicase
Genome locationchr11:1670076..1671792
RNA-Seq ExpressionLsi11G001510
SyntenyLsi11G001510
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003678 - DNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459900.1 PREDICTED: ATP-dependent DNA helicase Q-like 3 isoform X2 [Cucumis melo]1.4e-3894.19Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKSSLPLQS IRPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKSVCYQIPALAS G+VLVVCPLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

XP_038889796.1 ATP-dependent DNA helicase Q-like 3 isoform X1 [Benincasa hispida]1.9e-4087.76Show/hide
Query:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        +VR +F    VEMKKSSLPLQST+RPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKS+CYQIPALAS GIVLVVCPLI
Subjt:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

XP_038889797.1 ATP-dependent DNA helicase Q-like 3 isoform X2 [Benincasa hispida]1.9e-4087.76Show/hide
Query:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        +VR +F    VEMKKSSLPLQST+RPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKS+CYQIPALAS GIVLVVCPLI
Subjt:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

XP_038889798.1 ATP-dependent DNA helicase Q-like 3 isoform X3 [Benincasa hispida]1.9e-4087.76Show/hide
Query:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        +VR +F    VEMKKSSLPLQST+RPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKS+CYQIPALAS GIVLVVCPLI
Subjt:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

XP_038889799.1 ATP-dependent DNA helicase Q-like 3 isoform X4 [Benincasa hispida]1.9e-4087.76Show/hide
Query:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        +VR +F    VEMKKSSLPLQST+RPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKS+CYQIPALAS GIVLVVCPLI
Subjt:  LVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

TrEMBL top hitse value%identityAlignment
A0A1S3CBB1 ATP-dependent DNA helicase6.7e-3994.19Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKSSLPLQS IRPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKSVCYQIPALAS G+VLVVCPLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

A0A1S3CBQ2 ATP-dependent DNA helicase6.7e-3994.19Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKSSLPLQS IRPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKSVCYQIPALAS G+VLVVCPLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

A0A5A7V2G7 ATP-dependent DNA helicase1.1e-3894.19Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKSSLPLQS IRPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKSVCYQIPALAS G VLVVCPLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

A0A5D3CK54 ATP-dependent DNA helicase1.1e-3894.19Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKSSLPLQS IRPEKHK+SKESLTKLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKSVCYQIPALAS G VLVVCPLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

A0A6J1DKU9 ATP-dependent DNA helicase1.4e-3689.53Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKSSLPLQS I PEKHK+SK+SL KLLRWHFGHSEFRGKQLETIEAVLSG+DCFCLMPTGGGKS CYQIPALA+ GIVLVVCPLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

SwissProt top hitse value%identityAlignment
O88700 Bloom syndrome protein homolog5.5e-1455.22Show/hide
Query:  HSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL
        H+KE + K+    FG   FR  QLE I A L G DCF LMPTGGGKS+CYQ+PA  S G+ +V+ PL
Subjt:  HSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL

P54132 Bloom syndrome protein7.2e-1455.22Show/hide
Query:  HSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL
        H+KE + K+    FG   FR  QLE I A L G DCF LMPTGGGKS+CYQ+PA  S G+ +V+ PL
Subjt:  HSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL

Q9DEY9 Bloom syndrome protein homolog7.2e-1449.37Show/hide
Query:  PLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL
        P     R     HSKE + K+    FG   FR  QLE I A L G DCF LMPTGGGKS+CYQ+P   S G+ +V+ PL
Subjt:  PLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL

Q9FT72 ATP-dependent DNA helicase Q-like 38.5e-3173.26Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKS LP+Q+    +K+   KE+L KLLRWHFGH++FRGKQLE I+AV+SGRDCFCLMPTGGGKS+CYQIPALA  GIVLVV PLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

Q9I920 Bloom syndrome protein homolog8.5e-1548.91Show/hide
Query:  VEMKKSSLPL-----QSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL
        +  K SS PL         R  K  HS+E L K+    FG   FR  QLE I A L G DCF LMPTGGGKS+CYQ+PA  S G+ +V+ PL
Subjt:  VEMKKSSLPL-----QSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPL

Arabidopsis top hitse value%identityAlignment
AT1G10930.1 DNA helicase (RECQl4A)4.1e-1258.18Show/hide
Query:  FGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        FG+  FR  Q E I A +SG D F LMPTGGGKS+ YQ+PAL   GI LV+ PL+
Subjt:  FGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

AT1G27880.1 DEAD/DEAH box RNA helicase family protein1.6e-1345.57Show/hide
Query:  LQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        ++  I   K + S E+LTKLL   +G+  FR  QL+ I+ +L G     ++PTG GKS+CYQIPA+   GI LVV PL+
Subjt:  LQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

AT1G60930.1 RECQ helicase L4B5.3e-1258.18Show/hide
Query:  FGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        FG+  FR  Q E I A +SG D F LMPTGGGKS+ YQ+PAL   GI LV+ PL+
Subjt:  FGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

AT3G05740.1 RECQ helicase l14.5e-1149.09Show/hide
Query:  FGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        FG+  FR  Q +   A +  +DCF LMPTGGGKS+CYQ+PA    G+ +V+ PL+
Subjt:  FGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI

AT4G35740.1 DEAD/DEAH box RNA helicase family protein6.0e-3273.26Show/hide
Query:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI
        MKKS LP+Q+    +K+   KE+L KLLRWHFGH++FRGKQLE I+AV+SGRDCFCLMPTGGGKS+CYQIPALA  GIVLVV PLI
Subjt:  MKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTACTTTTGATTTTGGTTCGATCTAGTTTCTATACTCACATGGTAGAAATGAAGAAGTCATCGCTGCCATTGCAGAGTACTATCCGCCCCGAAAAGCATAAACA
TAGCAAGGAATCCTTGACGAAGCTCTTAAGGTGGCATTTTGGACATTCCGAGTTTAGGGGAAAGCAATTGGAAACCATTGAAGCTGTTTTATCAGGAAGGGATTGTTTCT
GTCTCATGCCCACTGGGGGAGGGAAGTCAGTGTGTTATCAGATCCCTGCTCTAGCTTCAAAAGGAATTGTGCTTGTTGTTTGCCCCTTAATAGATAATTGCACCCTGCTA
TTGCCTAAATCATCAAGTATTCGCTTGCAGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTACTTTTGATTTTGGTTCGATCTAGTTTCTATACTCACATGGTAGAAATGAAGAAGTCATCGCTGCCATTGCAGAGTACTATCCGCCCCGAAAAGCATAAACA
TAGCAAGGAATCCTTGACGAAGCTCTTAAGGTGGCATTTTGGACATTCCGAGTTTAGGGGAAAGCAATTGGAAACCATTGAAGCTGTTTTATCAGGAAGGGATTGTTTCT
GTCTCATGCCCACTGGGGGAGGGAAGTCAGTGTGTTATCAGATCCCTGCTCTAGCTTCAAAAGGAATTGTGCTTGTTGTTTGCCCCTTAATAGATAATTGCACCCTGCTA
TTGCCTAAATCATCAAGTATTCGCTTGCAGCATTGA
Protein sequenceShow/hide protein sequence
MLVLLILVRSSFYTHMVEMKKSSLPLQSTIRPEKHKHSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGRDCFCLMPTGGGKSVCYQIPALASKGIVLVVCPLIDNCTLL
LPKSSSIRLQH