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Lsi11G001550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr11:1693093..1694045
RNA-Seq ExpressionLsi11G001550
SyntenyLsi11G001550
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0031145 - anaphase-promoting complex-dependent catabolic process (biological process)
GO:0005680 - anaphase-promoting complex (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2960678.1 RING-box 1a [Olea europaea subsp. europaea]3.4e-0780Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSL
        VCNHAFHFHCISRWLKTRQVCPLG     FP+S L
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSL
CAA2967018.1 RING-box 1a [Olea europaea subsp. europaea]2.0e-0777.78Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLI
        VCNHAFHFHCISRWLKTRQVCPLG     FP+S +I
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLI
KAF5733497.1 hypothetical protein HS088_TW17G01041 [Tripterygium wilfordii]1.5e-0755.88Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPHLYMNFENLKGALPFLQIIASGNFRSTVTRT
        VCNHAFHFHCISRWLKTRQVCPLG            P L             LQIIASGN RS  T+T
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPHLYMNFENLKGALPFLQIIASGNFRSTVTRT
THG22704.1 hypothetical protein TEA_005095 [Camellia sinensis var. sinensis]1.6e-0958.21Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPH----LYMNFENLKGALPFLQIIASGNFRS
        VCNHAFHFHCISRWLKTRQVCPLG  +  + Y +L  H    L ++F    G+L F+QI ASG+FR+
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPH----LYMNFENLKGALPFLQIIASGNFRS
THG22707.1 hypothetical protein TEA_005098 [Camellia sinensis var. sinensis]3.3e-1052.87Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFP--YSSLIPH----LYMNFENLKGALPFLQIIASGNFRSTVTRTFMLLKDMILKILM
        VCNHAFHFHCISRWLKTRQVCPLG   KF+   Y +L  H    L ++F    G+L F+QI ASG+FRS  TR F+ +     + L+
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFP--YSSLIPH----LYMNFENLKGALPFLQIIASGNFRSTVTRTFMLLKDMILKILM
TrEMBL top hitse value%identityAlignment
A0A0S3SHB7 RING-type domain-containing protein4.8e-0793.1Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKF
        VCNHAFHFHCISRWLKTRQVCPLGM  KF
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKF
A0A4S4F121 Uncharacterized protein8.0e-1058.21Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPH----LYMNFENLKGALPFLQIIASGNFRS
        VCNHAFHFHCISRWLKTRQVCPLG  +  + Y +L  H    L ++F    G+L F+QI ASG+FR+
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPH----LYMNFENLKGALPFLQIIASGNFRS
A0A4V3WR40 RING-type domain-containing protein1.6e-1052.87Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFP--YSSLIPH----LYMNFENLKGALPFLQIIASGNFRSTVTRTFMLLKDMILKILM
        VCNHAFHFHCISRWLKTRQVCPLG   KF+   Y +L  H    L ++F    G+L F+QI ASG+FRS  TR F+ +     + L+
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFP--YSSLIPH----LYMNFENLKGALPFLQIIASGNFRSTVTRTFMLLKDMILKILM
A0A6P5FVJ8 uncharacterized protein LOC1097185113.7e-0786.67Show/hide
Query:  QTRVCNHAFHFHCISRWLKTRQVCPLGMRF
        QTRVCNHAFHFHCIS+WLK RQVCPLG+ F
Subjt:  QTRVCNHAFHFHCISRWLKTRQVCPLGMRF
A0A7J7CHG7 RING-type domain-containing protein7.4e-0855.88Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPHLYMNFENLKGALPFLQIIASGNFRSTVTRT
        VCNHAFHFHCISRWLKTRQVCPLG            P L             LQIIASGN RS  T+T
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPHLYMNFENLKGALPFLQIIASGNFRSTVTRT
SwissProt top hitse value%identityAlignment
P62877 E3 ubiquitin-protein ligase RBX15.5e-0892.31Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMR
        VCNHAFHFHCISRWLKTRQVCPL  R
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMR
P62878 E3 ubiquitin-protein ligase RBX15.5e-0892.31Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMR
        VCNHAFHFHCISRWLKTRQVCPL  R
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMR
Q8QG64 RING-box protein 15.5e-0892.31Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMR
        VCNHAFHFHCISRWLKTRQVCPL  R
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMR
Q940X7 RING-box protein 1a9.4e-08100Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPL
        VCNHAFHFHCISRWLKTRQVCPL
Subjt:  VCNHAFHFHCISRWLKTRQVCPL
Q9W5E1 RING-box protein 1A5.5e-0892.31Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPLGMR
        VCNHAFHFHCISRWLKTRQVCPL  R
Subjt:  VCNHAFHFHCISRWLKTRQVCPLGMR
Arabidopsis top hitse value%identityAlignment
AT3G42830.1 RING/U-box superfamily protein6.7e-09100Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPL
        VCNHAFHFHCISRWLKTRQVCPL
Subjt:  VCNHAFHFHCISRWLKTRQVCPL
AT5G20570.1 RING-box 16.7e-09100Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPL
        VCNHAFHFHCISRWLKTRQVCPL
Subjt:  VCNHAFHFHCISRWLKTRQVCPL
AT5G20570.2 RING-box 13.9e-0988.89Show/hide
Query:  HQTRVCNHAFHFHCISRWLKTRQVCPL
        H   VCNHAFHFHCISRWLKTRQVCPL
Subjt:  HQTRVCNHAFHFHCISRWLKTRQVCPL
AT5G20570.3 RING-box 16.7e-09100Show/hide
Query:  VCNHAFHFHCISRWLKTRQVCPL
        VCNHAFHFHCISRWLKTRQVCPL
Subjt:  VCNHAFHFHCISRWLKTRQVCPL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGGATGCGAACTACTATGCTAAAACCCTACTTGCCAAATTGTCTTATCGGTTCTGTTTCTCTGGTCTCCCTGTTGGAGGTAATGACTTTAGTCCAATCGGTTAC
ATCAAGTAGTTGCAAATCTTACAGTCTAAATGTTCTGTTTCTGTTTGAGAAATTAAAGGGAAGAAACTGTTCATGTGGATTCATAAATCATATTGAATTTGTAAAGATGA
TGATCAAGTCTGTTATTCTAGCTTCATATTGTTTTTTAGTCTGGTTAGTTAAAACTTTTTCCAACTTATGGCATGAAACATTCTCTTGCAATTATCACCAAACACGAGTG
TGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGCCCATTGGGTATGCGTTTCAAGTTCTTCCCCTACTCTAGTCTTATCCCACA
TCTTTATATGAACTTTGAAAATTTAAAGGGAGCTTTGCCATTTTTACAGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGATA
TGATCCTTAAAATTCTCATGGGGCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGGATGCGAACTACTATGCTAAAACCCTACTTGCCAAATTGTCTTATCGGTTCTGTTTCTCTGGTCTCCCTGTTGGAGGTAATGACTTTAGTCCAATCGGTTAC
ATCAAGTAGTTGCAAATCTTACAGTCTAAATGTTCTGTTTCTGTTTGAGAAATTAAAGGGAAGAAACTGTTCATGTGGATTCATAAATCATATTGAATTTGTAAAGATGA
TGATCAAGTCTGTTATTCTAGCTTCATATTGTTTTTTAGTCTGGTTAGTTAAAACTTTTTCCAACTTATGGCATGAAACATTCTCTTGCAATTATCACCAAACACGAGTG
TGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGCCCATTGGGTATGCGTTTCAAGTTCTTCCCCTACTCTAGTCTTATCCCACA
TCTTTATATGAACTTTGAAAATTTAAAGGGAGCTTTGCCATTTTTACAGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGATA
TGATCCTTAAAATTCTCATGGGGCTATAA
Protein sequenceShow/hide protein sequence
MWRMRTTMLKPYLPNCLIGSVSLVSLLEVMTLVQSVTSSSCKSYSLNVLFLFEKLKGRNCSCGFINHIEFVKMMIKSVILASYCFLVWLVKTFSNLWHETFSCNYHQTRV
CNHAFHFHCISRWLKTRQVCPLGMRFKFFPYSSLIPHLYMNFENLKGALPFLQIIASGNFRSTVTRTFMLLKDMILKILMGL