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Lsi11G001560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-box protein 1a-like
Genome locationchr11:1694949..1695730
RNA-Seq ExpressionLsi11G001560
SyntenyLsi11G001560
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0031461 - cullin-RING ubiquitin ligase complex (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3439695.1 hypothetical protein FNV43_RR17973 [Rhamnella rubrinervis]6.2e-3991.95Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

XP_015889019.1 RING-box protein 1a [Ziziphus jujuba]6.2e-3991.95Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

XP_022933228.1 RING-box protein 1a [Cucurbita moschata]6.2e-3991.95Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVPAG+ASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

XP_038889977.1 RING-box protein 1a-like isoform X1 [Benincasa hispida]7.4e-4094.25Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

XP_038889978.1 RING-box protein 1a-like isoform X2 [Benincasa hispida]2.5e-40100Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGT
        MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGT
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGT

TrEMBL top hitse value%identityAlignment
A0A5N5F037 RING-box protein 1a3.9e-3990.8Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPM+PAG+ SSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

A0A6J1DPM4 RING-box protein 1a-like3.0e-3991.95Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

A0A6J1F460 RING-box protein 1a3.0e-3991.95Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVPAG+ASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

A0A6J1I027 RING-box protein 1a3.0e-3991.95Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVPAG+ASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

A0A6P4A6G4 RING-box protein 1a3.0e-3991.95Show/hide
Query:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

SwissProt top hitse value%identityAlignment
P62877 E3 ubiquitin-protein ligase RBX11.8e-2874.36Show/hide
Query:  MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        M  A D  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

P62878 E3 ubiquitin-protein ligase RBX11.8e-2874.36Show/hide
Query:  MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        M  A D  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

Q8QG64 RING-box protein 15.2e-2873.08Show/hide
Query:  MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        M  A D  + +  +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

Q940X7 RING-box protein 1a3.9e-3684.09Show/hide
Query:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

Q9M2B0 RING-box protein 1b2.1e-2973.86Show/hide
Query:  MATLDSDVPMVPAGDASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MA+L+SDV M   G++SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

Arabidopsis top hitse value%identityAlignment
AT3G42830.1 RING/U-box superfamily protein1.5e-3073.86Show/hide
Query:  MATLDSDVPMVPAGDASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MA+L+SDV M   G++SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

AT5G20570.1 RING-box 12.8e-3784.09Show/hide
Query:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS
        MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Subjt:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS

AT5G20570.2 RING-box 11.8e-3689.02Show/hide
Query:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
        MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Subjt:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW

AT5G20570.3 RING-box 14.2e-3368.87Show/hide
Query:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
        MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAW                   IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Subjt:  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW

Query:  GTFSYS
        G  +++
Subjt:  GTFSYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTTGGACTCCGACGTGCCGATGGTTCCGGCCGGCGACGCTTCGAGCAGTGCCGGCCCTTCATCTACCAAGAAACCCAAGCGTTTTGAGATCAAGAAGTGGAA
CGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAACTGTGCGATCTGTAGGAACCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCA
GCGAGGAATGTACCGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCTCTGCTGAATATTTAG
mRNA sequenceShow/hide mRNA sequence
CCCAGACTGTTTTTAACCAGCTAAACCGGGTGTCAAGTCAACATTATTTTTTTCCTTCCTAAAAAAACTTTTTCCTTTTTCTACTATGTGTCGACATCATGATGTAATAT
CGATCGGTTAAATACAAAATAAAAATTCAATGGTAAACAACATTTTTTTTTGGAAAATAAAAAATTTAAGAGCCAATCGGAGGAATTGAGTCCGCCCGTTTCGCGCCCAC
GGAGGAGGAAGAAGCATCCTTTATTGCGAGTTATTATGGCCACCTTGGACTCCGACGTGCCGATGGTTCCGGCCGGCGACGCTTCGAGCAGTGCCGGCCCTTCATCTACC
AAGAAACCCAAGCGTTTTGAGATCAAGAAGTGGAACGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAACTGTGCGATCTGTAGGAACCATATCATGGATCTCTG
TATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACCGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCTCTGCTGAATATTTAG
Protein sequenceShow/hide protein sequence
MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLLNI