CuGenDBv2

Gene ID	Lsi11G001680
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem II PsbX
Genome location	chr11:1779479..1779856
RNA-Seq Expression	Lsi11G001680
Synteny	Lsi11G001680
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

3.8e-47

92.8

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GAVIGVANFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

XP_008459641.1 PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]

4.2e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SM MPITNAAQKR R+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GAVIGVANFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

XP_011648590.1 uncharacterized protein LOC105434533 [Cucumis sativus]

3.2e-46

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GAVIGVANFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

1.6e-45

90.4

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR  +AFAK LPLRPSNKPT   ASSNS AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GA+IGV+NFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

2.2e-47

93.6

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR  EAFAKPLPLRPSNKP   +ASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GAVIGVANFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

1.5e-46

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GAVIGVANFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

A0A1S3CAS0 uncharacterized protein LOC103498700

2.0e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SM MPITNAAQKR R+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GAVIGVANFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

A0A5A7V6L0 Membrane family protein

1.8e-47

92.8

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GAVIGVANFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

7.6e-46

90.4

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR  +AFAK LPLRPSNKPT   ASSNS AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVVTAI+GA+IGV+NFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

2.9e-45

89.6

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR  +AFAK LPLRPSNKPT   ASSNS AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        AGGVVV AI+GA+IGV+NFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

3.9e-26

54.4

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Query:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+S+  P+         +   F KPLPL+PS    +  A+   + + QV+A   +KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAIVGAVIGVANFDPVKRT
        +GG+V+T I+G V+GV+NFDPVKRT
Subjt:  AGGVVVTAIVGAVIGVANFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCGATTACTAATGCGGCTCAGAAGAGAGCGAGGAAGGTCGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCGTCCAA
CAAGCCAACAAGTGCTTCAGCTTCGTCAAACTCCAGCGCCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTT
CCATGGTGCTACCTGAGGTAGCTGAAGCTGCTGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCTGGTGGAGTAGTTGTCACTGCTATCGTG
GGTGCAGTTATTGGCGTCGCCAATTTCGATCCTGTCAAGCGTACCTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIV
GAVIGVANFDPVKRT

Lsi11G001680 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome