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Lsi11G001700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNuclear transcription factor Y subunit
Genome locationchr11:1803046..1803561
RNA-Seq ExpressionLsi11G001700
SyntenyLsi11G001700
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022946727.1 nuclear transcription factor Y subunit A-3-like isoform X1 [Cucurbita moschata]7.9e-0986.49Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        ++LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
XP_022946728.1 nuclear transcription factor Y subunit A-3-like isoform X2 [Cucurbita moschata]7.9e-0986.49Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        ++LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
XP_022999213.1 nuclear transcription factor Y subunit A-3-like isoform X1 [Cucurbita maxima]3.5e-0989.19Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        V+LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
XP_022999214.1 nuclear transcription factor Y subunit A-4-like isoform X2 [Cucurbita maxima]7.9e-0986.49Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        ++LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
XP_038890756.1 nuclear transcription factor Y subunit A-4-like isoform X2 [Benincasa hispida]1.3e-0893.94Show/hide
Query:  MNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        MNTMAIP ENFSQKNLDQDS+HSVFPFSVDCTP
Subjt:  MNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
TrEMBL top hitse value%identityAlignment
A0A6J1G4J0 Nuclear transcription factor Y subunit3.8e-0986.49Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        ++LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
A0A6J1G4M9 Nuclear transcription factor Y subunit3.8e-0986.49Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        ++LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
A0A6J1KA88 Nuclear transcription factor Y subunit7.2e-0890.91Show/hide
Query:  MNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        MN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  MNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
A0A6J1KGE7 Nuclear transcription factor Y subunit3.8e-0986.49Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        ++LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
A0A6J1KIZ5 Nuclear transcription factor Y subunit1.7e-0989.19Show/hide
Query:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
        V+LLMN MAIP +NFSQKNLDQDSVHSVFPFSVDCTP
Subjt:  VDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTAATCTTCATGCATTTTGCTACGAAGATGTAGACACAATATTAGATATTGGTGCAAGTGATGATGCTGATATCAAGGATGTAGACTTGTTGATGAACACGATGGCCAT
TCCACACGAGAACTTTTCCCAGAAAAATCTTGATCAGGATTCTGTCCATTCAGTATTCCCATTTTCTGTTGATTGTACACCGTAG
mRNA sequenceShow/hide mRNA sequence
GCTAATCTTCATGCATTTTGCTACGAAGATGTAGACACAATATTAGATATTGGTGCAAGTGATGATGCTGATATCAAGGATGTAGACTTGTTGATGAACACGATGGCCAT
TCCACACGAGAACTTTTCCCAGAAAAATCTTGATCAGGATTCTGTCCATTCAGTATTCCCATTTTCTGTTGATTGTACACCGTAG
Protein sequenceShow/hide protein sequence
ANLHAFCYEDVDTILDIGASDDADIKDVDLLMNTMAIPHENFSQKNLDQDSVHSVFPFSVDCTP