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Lsi11G001740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G001740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein L18ae family
Genome locationchr11:1824365..1826987
RNA-Seq ExpressionLsi11G001740
SyntenyLsi11G001740
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]1.5e-6294.62Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAASAIAALACSI+LL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]1.8e-6396.92Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAASAIAALACSIILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

XP_011648592.1 uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]1.5e-6294.62Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAASAIAALACSI+LL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]3.1e-6092.31Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        + KID TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAAS+IAALACS+ILLVVVAV L
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]1.6e-6499.23Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        +GKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAASAIAALACSIILLVVVAVLL
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein7.2e-6394.62Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAASAIAALACSI+LL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

A0A1S3CAZ9 uncharacterized protein LOC1034986588.5e-6496.92Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAASAIAALACSIILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-18.5e-6496.92Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAASAIAALACSIILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

A0A6J1G4J6 uncharacterized protein LOC1114506861.5e-6092.31Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        + KID TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAAS+IAALACS+ILLVVVAV L
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

A0A6J1KAT7 uncharacterized protein LOC1114937954.4e-6091.54Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR
        + KID TVQLVKSVSD+HLDLLRP+ARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSIILLVVVAVLL
        DPRERAGLAAS+IAALACS+ILLVVVAV L
Subjt:  DPRERAGLAASAIAALACSIILLVVVAVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family6.1e-2262.92Show/hide
Query:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLVVVAVLL
        + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  S+ L++ V VL+
Subjt:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLVVVAVLL

AT1G54217.2 Ribosomal protein L18ae family1.6e-2260Show/hide
Query:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLVVVAVLL
        D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  S+ L++ V VL+
Subjt:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLVVVAVLL

AT4G26060.1 Ribosomal protein L18ae family3.7e-3560.98Show/hide
Query:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPR
        D + +LVKSV+DKH  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF FP +WYYAT+LYF N  R+DPR
Subjt:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPR

Query:  ERAGLAASAIAALACSIILLVVV
        ERAGLAASAI A+  S++LLV+V
Subjt:  ERAGLAASAIAALACSIILLVVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown7.7e-3357.5Show/hide
Query:  QLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAG
        +LVK ++D+H  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAG
Subjt:  QLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAG

Query:  LAASAIAALACSIILLVVVA
        LAASAI A+  S++LLV+ A
Subjt:  LAASAIAALACSIILLVVVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)2.3e-2966.3Show/hide
Query:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLVVVA
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAGLAASAI A+  S++LLV+ A
Subjt:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLVVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTCGGGGAACTGTCCCTTCGTTTGTGGAGATGACGAGACTGCGATTGTATAATTTTCTACTATCTGTTATTCTTGACTTTGGCGTGGAATATGACTATGATTC
ACGAAGTGTAGTTTTGGTCAAGCTAGGTTATCTTATTACCAATTCATCTGATGGCTTTTGGAAGATTGAAAAATTCCATAGAGTCGTTGTGCTCAATCGAATTAATGTAA
ATTTTCAATCCAGTTTCAATCTTCTGCTTGCTACATTTGAAGAATATGGAGCTGTCTTGTCGGATGGAAAAATTGACCAGACGGTGCAACTGGTGAAGTCGGTCTCTGAT
AAACATCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTTCAGACCACATAAGGAGCAAGTACACACTTCTCAGAGATGT
AGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGTGGCATAGGATGGTTTTCTTTCCTCCTCGGGTTTTTTTTCCCACTAATGTGGTACTATG
CCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGAGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCGCTTGCATGTTCGATCATCTTGTTAGTCGTTGTA
GCTGTTCTCCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATTCGGGGAACTGTCCCTTCGTTTGTGGAGATGACGAGACTGCGATTGTATAATTTTCTACTATCTGTTATTCTTGACTTTGGCGTGGAATATGACTATGATTC
ACGAAGTGTAGTTTTGGTCAAGCTAGGTTATCTTATTACCAATTCATCTGATGGCTTTTGGAAGATTGAAAAATTCCATAGAGTCGTTGTGCTCAATCGAATTAATGTAA
ATTTTCAATCCAGTTTCAATCTTCTGCTTGCTACATTTGAAGAATATGGAGCTGTCTTGTCGGATGGAAAAATTGACCAGACGGTGCAACTGGTGAAGTCGGTCTCTGAT
AAACATCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTTCAGACCACATAAGGAGCAAGTACACACTTCTCAGAGATGT
AGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGTGGCATAGGATGGTTTTCTTTCCTCCTCGGGTTTTTTTTCCCACTAATGTGGTACTATG
CCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGAGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCGCTTGCATGTTCGATCATCTTGTTAGTCGTTGTA
GCTGTTCTCCTATGATAGCCCTTCCTTCTCCACACTTGAAACAGCATTCTTAATCTTTGCCTCTTCAGCCTTGCCAATGCAGTTTCAATCTGAACAGGTTTCGTGGATGT
GCAGATAAATGATTAAAGGGTTCTGTTGCTCAACTTTGGTGATTTCTACTACTTTTCTTTGCAAAAAGAATGCAAATGTTCATATATCATATATATATATATATATATAT
ATATACATATATTTGCCACCTCTTTCAGAAGAGAGTTGTCGCATTTGTAATACATTACACAAAGGTAATACATAATTTTATATCCCTTAATACTTTAGTACAAAGTTTGG
AAACAGTTTTAAATGGCGAAATAAAAACCTAGCCAGGAACAAAAAACTGTAATTTACTTATTTATGTTATACCAATAAGAACTAGGATACCTCCATGTTTCCAAGCGAAC
AAAATTGTATCAAATTTAATAGACAAAACAATCCAGATTTCTCG
Protein sequenceShow/hide protein sequence
MDIRGTVPSFVEMTRLRLYNFLLSVILDFGVEYDYDSRSVVLVKLGYLITNSSDGFWKIEKFHRVVVLNRINVNFQSSFNLLLATFEEYGAVLSDGKIDQTVQLVKSVSD
KHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLVVV
AVLL