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Lsi11G002300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G002300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RNF181-like
Genome locationchr11:2306923..2307291
RNA-Seq ExpressionLsi11G002300
SyntenyLsi11G002300
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061529.1 RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa]4.6e-5085.84Show/hide
Query:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIS
        TSAN+AA YIMDIESMFDLDTVL+GADDFYY  T VAPPPVVV DLPTVA DD CAVCMEDFLP+EGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI+
Subjt:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIS

Query:  SGDRKEAPKTVQV
         GD+ E  KTVQV
Subjt:  SGDRKEAPKTVQV

KAE8651508.1 hypothetical protein Csa_019333 [Cucumis sativus]1.4e-4683.78Show/hide
Query:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI
        TSANYAASYIMDIESMFDLDTVLTGADDFYY  TVVAPPPV+V +LPTV A DDVCAVCMEDFLP+EGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR HI
Subjt:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI

Query:  SSGDRKEAPKT
        + GD+ E  KT
Subjt:  SSGDRKEAPKT

XP_011650093.1 E3 ubiquitin-protein ligase RNF115 [Cucumis sativus]3.3e-4884.21Show/hide
Query:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI
        TSANYAASYIMDIESMFDLDTVLTGADDFYY  TVVAPPPV+V +LPTV A DDVCAVCMEDFLP+EGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR HI
Subjt:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI

Query:  SSGDRKEAPKTVQV
        + GD+ E  KTVQV
Subjt:  SSGDRKEAPKTVQV

XP_023537996.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]1.2e-4272.13Show/hide
Query:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS
        MA VL E T SA +AASYIMD+ESMFDLDTVLTGADD+Y ++ +  PP VVV DLPTV  DDVCAVCME+F  +EGGKQIPCGHVYHQ+CISSWLSVGD 
Subjt:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS

Query:  CPLCRRHISSGDRKEAPKTVQV
        CPLCR H+SS ++ E  K VQV
Subjt:  CPLCRRHISSGDRKEAPKTVQV

XP_038877426.1 E3 ubiquitin-protein ligase RNF126-like [Benincasa hispida]1.6e-5083.61Show/hide
Query:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS
        MATVL ETT++  YAASYIMDIESMFDLDTVLTGADDFYYN+TVVAPPPVVV DLPTVA  DVCAVC+EDFLP+E GKQIPCGHVYHQSC+SSWLSVGDS
Subjt:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS

Query:  CPLCRRHISSGDRKEAPKTVQV
        CPLCRRHI+S +  EAPKT  V
Subjt:  CPLCRRHISSGDRKEAPKTVQV

TrEMBL top hitse value%identityAlignment
A0A0A0LEZ1 RING-type domain-containing protein1.6e-4884.21Show/hide
Query:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI
        TSANYAASYIMDIESMFDLDTVLTGADDFYY  TVVAPPPV+V +LPTV A DDVCAVCMEDFLP+EGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR HI
Subjt:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI

Query:  SSGDRKEAPKTVQV
        + GD+ E  KTVQV
Subjt:  SSGDRKEAPKTVQV

A0A5A7V793 RING-H2 finger protein ATL5-like2.2e-5085.84Show/hide
Query:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIS
        TSAN+AA YIMDIESMFDLDTVL+GADDFYY  T VAPPPVVV DLPTVA DD CAVCMEDFLP+EGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI+
Subjt:  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIS

Query:  SGDRKEAPKTVQV
         GD+ E  KTVQV
Subjt:  SGDRKEAPKTVQV

A0A6J1FDN7 E3 ubiquitin-protein ligase RING1-like5.5e-4170.73Show/hide
Query:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSV-GD
        MA VL E T SA +AA YIMD+ESMFDLDTVLTGADD+Y ++ +  PP VVV DLPTV  DDVCAVCME+F  +EGGKQIPCGHVYHQ+CISSWLSV GD
Subjt:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSV-GD

Query:  SCPLCRRHISSGDRKEAPKTVQV
         CPLCR H+SS ++ E  K VQV
Subjt:  SCPLCRRHISSGDRKEAPKTVQV

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like2.8e-2454.92Show/hide
Query:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS
        MA V     T+ N AA+Y   IE +FDLD VL+GADDF   +  ++    +V DLPTV V DVCAVC+EDF P+E GKQIPCGHVYH+SCISSWL+V + 
Subjt:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS

Query:  CPLCRRHISSGDRKEAPKTVQV
        CPLCR  I +G   E+P +  +
Subjt:  CPLCRRHISSGDRKEAPKTVQV

A0A6J1HNM2 E3 ubiquitin-protein ligase RNF181-like6.5e-4272.36Show/hide
Query:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVA-PPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGD
        MA VL E T SA +AASYIMD+ESMFDLDTVLTGADD+Y ++ ++  PP VVV DLPTV  DDVCAVCME+F  +EGGKQIPCGHVYHQSCISSWLSVGD
Subjt:  MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVA-PPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGD

Query:  SCPLCRRHISSGDRKEAPKTVQV
         CPLCR H+SS ++ E  K VQV
Subjt:  SCPLCRRHISSGDRKEAPKTVQV

SwissProt top hitse value%identityAlignment
Q6DIP3 E3 ubiquitin-protein ligase RNF1268.3e-1033Show/hide
Query:  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP
        LDT++T   + + N     PPP     +  LPT+ + +        C VC ED+   E  +Q+PC H++H  CI  WL   D+CP+CR+ +S  +    P
Subjt:  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP

Q6IRP0 E3 ubiquitin-protein ligase RNF126-B8.3e-1033Show/hide
Query:  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP
        LDT++T   + + N     PPP     +  LPT+ + +        C VC ED+   E  +Q+PC H++H  CI  WL   D+CP+CR+ +S  +    P
Subjt:  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP

Q91YL2 E3 ubiquitin-protein ligase RNF1262.2e-1036Show/hide
Query:  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP
        LDT++T   + + N     PPP     +  LPTV V +        C VC ED+   E  +Q+PC H++H SCI  WL   DSCP+CR+ ++  +    P
Subjt:  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP

Q9D0C1 E3 ubiquitin-protein ligase RNF1151.3e-1040.79Show/hide
Query:  PPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD
        PPP     +  LPTV V          C VC ED+  EE  +Q+PC H +H SCI  WL + D+CP+CR+ ++  D
Subjt:  PPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD

Q9Y4L5 E3 ubiquitin-protein ligase RNF1151.3e-1040.79Show/hide
Query:  PPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD
        PPP     +  LPTV V          C VC ED+  EE  +Q+PC H +H SCI  WL + D+CP+CR+ ++  D
Subjt:  PPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein2.6e-1133.33Show/hide
Query:  DDFYYN----------ETVVAPPP----------VVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSG
        DD  YN             + PPP           V++    +  + VCA+C E+F   E GK++ C H+YH SCI SWL++ ++CP+CR  ++ G
Subjt:  DDFYYN----------ETVVAPPP----------VVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSG

AT2G39720.1 RING-H2 finger C2A7.7e-1134.67Show/hide
Query:  NETVVAPPPVVVVDLPTVAVDDV---CAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD
        +++ +   P++ +D PT  + D    CAVC E+F+ +   +++PC H+YH  CI  WL++ +SCP+CR  + + D
Subjt:  NETVVAPPPVVVVDLPTVAVDDV---CAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD

AT3G02340.1 RING/U-box superfamily protein7.7e-1133.04Show/hide
Query:  NYAASYIMD--IESMFDLDTVLTGADDFYYNETVVAPPPV--VVVDLPTVAV--------DDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS
        N++  Y  D  +  MFD +T + G            PP    V+ DLP V +        ++VCAVC ++ L EE  +++PC H YH  CI  WL + ++
Subjt:  NYAASYIMD--IESMFDLDTVLTGADDFYYNETVVAPPPV--VVVDLPTVAV--------DDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDS

Query:  CPLCRRHISSGD
        CP+CR  + + D
Subjt:  CPLCRRHISSGD

AT3G60080.1 RING/U-box superfamily protein3.5e-1155.81Show/hide
Query:  VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCR
        +CAVC EDF+  E  +++PC H+YH  CI  WLS  +SCPLCR
Subjt:  VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCR

AT5G64920.1 COP1-interacting protein 87.7e-1143.75Show/hide
Query:  VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD------RKEAPKTV
        VCAVC +  +  E GK++PCGH YH  CI  WL   +SCP+CR  + + D      RK+   TV
Subjt:  VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD------RKEAPKTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGTCTTGTCTGAAACAACAACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTTGATCTCGACACGGTCCTCACCGGAGCCGATGA
CTTCTATTACAATGAAACCGTTGTAGCACCACCACCCGTGGTGGTCGTTGACTTGCCAACGGTGGCCGTCGACGACGTATGTGCGGTTTGCATGGAGGATTTCCTGCCGG
AGGAAGGAGGTAAACAGATCCCCTGTGGCCATGTGTACCATCAATCTTGTATATCCTCTTGGCTCTCCGTCGGCGACTCTTGCCCTCTTTGCCGCCGTCATATCTCCTCC
GGCGACAGAAAGGAGGCACCTAAAACTGTACAAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTGTCTTGTCTGAAACAACAACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTTGATCTCGACACGGTCCTCACCGGAGCCGATGA
CTTCTATTACAATGAAACCGTTGTAGCACCACCACCCGTGGTGGTCGTTGACTTGCCAACGGTGGCCGTCGACGACGTATGTGCGGTTTGCATGGAGGATTTCCTGCCGG
AGGAAGGAGGTAAACAGATCCCCTGTGGCCATGTGTACCATCAATCTTGTATATCCTCTTGGCTCTCCGTCGGCGACTCTTGCCCTCTTTGCCGCCGTCATATCTCCTCC
GGCGACAGAAAGGAGGCACCTAAAACTGTACAAGTTTAG
Protein sequenceShow/hide protein sequence
MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISS
GDRKEAPKTVQV