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Lsi11G002550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G002550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
Genome locationchr11:2588591..2594718
RNA-Seq ExpressionLsi11G002550
SyntenyLsi11G002550
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599455.1 hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sororia]7.9e-3290.11Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSLAPK NKRS SSELSPFKS CQSQPSAASTSR  CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

KAG7030432.1 hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-3290.11Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSLAPK NKRS SSELSPFKS CQSQPSAASTSR  CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

XP_004139345.1 uncharacterized protein LOC101209110 [Cucumis sativus]7.2e-3393.41Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPSAASTSR  CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

XP_023547330.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo]6.1e-3290.11Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSLAPK NKRS SSELSPFKS+CQSQPSAASTSR  CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

XP_038889658.1 uncharacterized protein LOC120079520 [Benincasa hispida]3.2e-3392.31Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        +  VSRLSSRLQSLAPKFNKRSS SELSPFKS CQSQPS ASTSR PCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

TrEMBL top hitse value%identityAlignment
A0A0A0LKT5 Uncharacterized protein3.5e-3393.41Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPSAASTSR  CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

A0A1S3C7U8 uncharacterized protein LOC103497847 isoform X16.5e-3291.21Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSR  CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

A0A5A7V7B3 Protein NUCLEAR FUSION DEFECTIVE 66.5e-3291.21Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSR  CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

A0A6J1G399 uncharacterized protein LOC1114503803.8e-3290.11Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSLAPK NKRS SSELSPFKS CQSQPSAASTSR  CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

A0A6J1KDE2 uncharacterized protein LOC1114938761.5e-3189.01Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + AVSRLSSRLQSLAPK NKRS SSELSPFKS+CQSQPSAAS SR  CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein2.3e-1357.78Show/hide
Query:  VSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR   + RLPVELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQG
Subjt:  VSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

AT1G55205.2 unknown protein1.8e-1357.14Show/hide
Query:  VSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGR
        + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR   + RLPVELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQG+
Subjt:  VSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGR

AT3G13674.1 unknown protein3.3e-1254.44Show/hide
Query:  VSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        + R SSRL+SL     NK ++ S L SP KS   + PS+A++ R   +SRLPVELS   S++PLHSAIA++RL+SSL++ES+ WGLVPQG
Subjt:  VSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG

AT4G39300.1 unknown protein7.5e-0436.26Show/hide
Query:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG
        M     L SR +++  K      ++  SPF S  QS P A         SR+   L S  +++PLHSA+A+ARL SS+  +S  W L+ QG
Subjt:  MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGCAGTCTCTCGGTTATCATCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTGTCAATCTCA
GCCCTCCGCAGCTTCTACATCTCGTCGTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCCATAGCTGCAGCAAGAT
TGATTTCAAGTTTAACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGAAGGAAGGAAGCCCTACAAAAGAATAGTGGCGAGCTGTTGGACTTCTTAAAGCACTTA
AACTCTCAAGCTTCTCTAAGTAAGACAATCTTTTTGGTGTTGCAACATTACCAGCAACTCTCCTTAATGGTCAATGATCTTATATCAGAATTGTCTTTGTCAACATCCCA
ACCCATGAAATCTGAAAGTGTTTTTGAAGCTGGAGAATCACTTGAACTCAGCTGCTTCTCTGTATCCACAGAAACATTCTCCAACGGCTCCTCGATCTCGGTCTCGATCG
ACGACTCTCGAGCAACGATTCATCATCTCTTGAAACATACCAAAATTCATGTAGTTTACCAAATTGATCCAGGTAACCCTGTCAATGATATTTCAAGTGAGAATTCAAAT
GAAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGCAGTCTCTCGGTTATCATCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTGTCAATCTCA
GCCCTCCGCAGCTTCTACATCTCGTCGTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCCATAGCTGCAGCAAGAT
TGATTTCAAGTTTAACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGAAGGAAGGAAGCCCTACAAAAGAATAGTGGCGAGCTGTTGGACTTCTTAAAGCACTTA
AACTCTCAAGCTTCTCTAAGTAAGACAATCTTTTTGGTGTTGCAACATTACCAGCAACTCTCCTTAATGGTCAATGATCTTATATCAGAATTGTCTTTGTCAACATCCCA
ACCCATGAAATCTGAAAGTGTTTTTGAAGCTGGAGAATCACTTGAACTCAGCTGCTTCTCTGTATCCACAGAAACATTCTCCAACGGCTCCTCGATCTCGGTCTCGATCG
ACGACTCTCGAGCAACGATTCATCATCTCTTGAAACATACCAAAATTCATGTAGTTTACCAAATTGATCCAGGTAACCCTGTCAATGATATTTCAAGTGAGAATTCAAAT
GAAGGATAG
Protein sequenceShow/hide protein sequence
MTAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGRKEALQKNSGELLDFLKHL
NSQASLSKTIFLVLQHYQQLSLMVNDLISELSLSTSQPMKSESVFEAGESLELSCFSVSTETFSNGSSISVSIDDSRATIHHLLKHTKIHVVYQIDPGNPVNDISSENSN
EG