; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G002650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G002650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionArabinogalactan protein 22, putative
Genome locationchr11:2682208..2686207
RNA-Seq ExpressionLsi11G002650
SyntenyLsi11G002650
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]4.3e-1878.12Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MSS+ LTAVP VGF+F+I+ QLA+GHSHDISPA  GPSNDGAA+DQGIAYVLLL+ALA+TYI+H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]1.6e-1259.38Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        M+SM L A+PI+GF+F+ L +  +G     SPAP GPSNDG  +DQGIAYVLL++ALA+TY+LH
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

KDP33656.1 hypothetical protein JCGZ_07227 [Jatropha curcas]6.1e-1262.5Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MS MNL A+PI+GF+F+ L QL +G +   SPA  GPS+DG  +DQGIAYVL+LVALAVTY+ H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]5.1e-1982.81Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MSS+ LTAVPIVGF+F+I+ QLA+GHSHDISPA AGPSNDGAA+DQGIAYVLLL+ALAVTYI+H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

OAY53733.1 hypothetical protein MANES_03G019400v8 [Manihot esculenta]6.1e-1259.38Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MS M L  +PI+G +F+ L QL+YG     SPAP GPS+DG A+DQGIA++L+LVALAVTY++H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

TrEMBL top hitse value%identityAlignment
A0A059CP27 Uncharacterized protein3.8e-1260.56Show/hide
Query:  RFDSENMSSMNLTAVP-IVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        RF    M+++    +P IVGF+F+ L QL YG S   SPAP GPSNDG A+DQGIAY LLLVALAVTY+ H
Subjt:  RFDSENMSSMNLTAVP-IVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

A0A067KBQ4 Uncharacterized protein2.9e-1262.5Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MS MNL A+PI+GF+F+ L QL +G +   SPA  GPS+DG  +DQGIAYVL+LVALAVTY+ H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

A0A0A0LIU0 Uncharacterized protein2.5e-1982.81Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MSS+ LTAVPIVGF+F+I+ QLA+GHSHDISPA AGPSNDGAA+DQGIAYVLLL+ALAVTYI+H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

A0A2C9W3S5 Uncharacterized protein2.9e-1259.38Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MS M L  +PI+G +F+ L QL+YG     SPAP GPS+DG A+DQGIA++L+LVALAVTY++H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

A0A5A7V7C0 Putative Arabinogalactan protein 222.1e-1878.12Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        MSS+ LTAVP VGF+F+I+ QLA+GHSHDISPA  GPSNDGAA+DQGIAYVLLL+ALA+TYI+H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.7e-0744.62Show/hide
Query:  MSSMN-LTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        M+S N +T   +  F+F ++  LA   S  ++PAPA P++DG ++DQGIAY+L++VAL +TY++H
Subjt:  MSSMN-LTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

Q8L9T8 Arabinogalactan protein 411.2e-0755.56Show/hide
Query:  IVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        IV  IF IL  +A  H+   +PAPA P++DG  +DQGIAYVL+LVAL +TY++H
Subjt:  IVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

Q9FK16 Arabinogalactan protein 224.2e-0845.31Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        M+S+      +  F+ + +  L    SH  SPAPA P++DG ++DQGIAYVL++VALA+TY +H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

Q9M373 Arabinogalactan protein 205.2e-0643.75Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        M+S N  AV I  F FV      +  +  ++PAP+ P++DG ++DQGIAY+L++VAL +TY++H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.3e-0844.62Show/hide
Query:  MSSMN-LTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        M+S N +T   +  F+F ++  LA   S  ++PAPA P++DG ++DQGIAY+L++VAL +TY++H
Subjt:  MSSMN-LTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

AT3G61640.1 arabinogalactan protein 203.7e-0743.75Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        M+S N  AV I  F FV      +  +  ++PAP+ P++DG ++DQGIAY+L++VAL +TY++H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

AT5G24105.1 arabinogalactan protein 418.7e-0955.56Show/hide
Query:  IVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        IV  IF IL  +A  H+   +PAPA P++DG  +DQGIAYVL+LVAL +TY++H
Subjt:  IVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH

AT5G53250.1 arabinogalactan protein 223.0e-0945.31Show/hide
Query:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH
        M+S+      +  F+ + +  L    SH  SPAPA P++DG ++DQGIAYVL++VALA+TY +H
Subjt:  MSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTYILH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGCAACGGAACTTCAATGCCACACAACGCAGCTTCGCAATTGGGCCTCCGTTTCGCCTGCTCCCACCTTCAGTCGCTTTCGTGTGCGTGTCCGAGTCAACCAGC
CGCCAACTCAAAATTTCTTCGATTCGATTCAGAAAATATGAGTTCGATGAACCTTACTGCCGTTCCGATCGTCGGATTCATTTTCGTGATTCTTTTTCAATTGGCTTACG
GTCACTCCCACGATATTTCTCCGGCGCCGGCGGGTCCTTCTAACGACGGAGCTGCACTTGACCAAGGGATTGCGTACGTTCTTCTTTTGGTTGCTCTTGCCGTTACTTAC
ATCCTCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGCAACGGAACTTCAATGCCACACAACGCAGCTTCGCAATTGGGCCTCCGTTTCGCCTGCTCCCACCTTCAGTCGCTTTCGTGTGCGTGTCCGAGTCAACCAGC
CGCCAACTCAAAATTTCTTCGATTCGATTCAGAAAATATGAGTTCGATGAACCTTACTGCCGTTCCGATCGTCGGATTCATTTTCGTGATTCTTTTTCAATTGGCTTACG
GTCACTCCCACGATATTTCTCCGGCGCCGGCGGGTCCTTCTAACGACGGAGCTGCACTTGACCAAGGGATTGCGTACGTTCTTCTTTTGGTTGCTCTTGCCGTTACTTAC
ATCCTCCATTAATAATTTTTATGGAGTTGTCTAAGAGATTCAAATGATTTTGGATTTGATATGTAATTTACTATTTTTTTTTTGTAGTTTTTTCTCCGTTTATTGGTGAA
GAAATTGCGTTGGAGATTTGAAATAATTCATTATTCTTTTTTTACTTAATTGAATACAATTCAACCTCTTAATTCGTTGATGAACTAAATTTAAACAGTACTACGAATTA
AAATGGATGGAATTATAAGAAAGGAGTTTGGTTTTAGTTAGTATTA
Protein sequenceShow/hide protein sequence
MYSNGTSMPHNAASQLGLRFACSHLQSLSCACPSQPAANSKFLRFDSENMSSMNLTAVPIVGFIFVILFQLAYGHSHDISPAPAGPSNDGAALDQGIAYVLLLVALAVTY
ILH