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Lsi11G002660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G002660
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHTH cro/C1-type domain-containing protein
Genome locationchr11:2687883..2688320
RNA-Seq ExpressionLsi11G002660
SyntenyLsi11G002660
Gene Ontology termsGO:0009408 - response to heat (biological process)
GO:0009414 - response to water deprivation (biological process)
GO:0009737 - response to abscisic acid (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR001387 - Cro/C1-type helix-turn-helix domain
IPR010982 - Lambda repressor-like, DNA-binding domain superfamily
IPR013729 - Multiprotein bridging factor 1, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061560.1 multiprotein-bridging factor 1c [Cucumis melo var. makuwa]9.7e-6392.41Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK  AAPVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

TYK10712.1 multiprotein-bridging factor 1c [Cucumis melo var. makuwa]3.3e-6393.1Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQALRDPKAVNQAIRSGA VQTVKKFDAG NKK  AAPVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

XP_004139340.1 multiprotein-bridging factor 1c [Cucumis sativus]1.9e-6393.1Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQALRDPKAVNQAIRSGA VQTVKKFDAG NKK TAAPVNARKL+EGTEPAALDRVA EVR  IQKAR+EKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

XP_008458302.1 PREDICTED: multiprotein-bridging factor 1c [Cucumis melo]9.7e-6392.41Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK  AAPVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

XP_038890461.1 multiprotein-bridging factor 1c [Benincasa hispida]3.6e-6595.86Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGA+AQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKA AAPVNARKLDE TEPAALDRVAAEVRL IQKAR+EKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

TrEMBL top hitse value%identityAlignment
A0A0A0LFV9 HTH cro/C1-type domain-containing protein9.4e-6493.1Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQALRDPKAVNQAIRSGA VQTVKKFDAG NKK TAAPVNARKL+EGTEPAALDRVA EVR  IQKAR+EKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

A0A1S3C8T1 multiprotein-bridging factor 1c4.7e-6392.41Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK  AAPVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

A0A5A7V2S1 Multiprotein-bridging factor 1c4.7e-6392.41Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK  AAPVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

A0A5D3CHG2 Multiprotein-bridging factor 1c1.6e-6393.1Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGAL+QDWEPVVLHKAKPKAQALRDPKAVNQAIRSGA VQTVKKFDAG NKK  AAPVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRGRSGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

A0A6J1HN61 multiprotein-bridging factor 1c8.8e-6290.34Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA
        MPSRFPGA++QDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGA V TVKKFDAGSNKKATAAPVNARKL+EGTEPAALDRV  EVR  IQKAR+EKKMSQA
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQA

Query:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        ELAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRG+SGK
Subjt:  ELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

SwissProt top hitse value%identityAlignment
Q6GPQ6 Endothelial differentiation-related factor 1 homolog1.4e-1946.21Show/hide
Query:  DWEPV-VLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERT
        DW+ V VL K  P A   +  +A+  A R G  V+T KK+ AG NK+ T    N  KLD  TE    DRV  EV   IQ+ R  K M+Q +LA +INE+ 
Subjt:  DWEPV-VLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERT

Query:  QVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR
        QV+ +YE GKA+PN  V+ K+E+V+G+KLRG+
Subjt:  QVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR

Q6PBY3 Endothelial differentiation-related factor 1 homolog8.9e-1942.75Show/hide
Query:  DWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQ
        DW+ V + + K  A   +  +AV  A R G AV+T KK+ AG NK+      N  KLD  TE  +  RV  EV   IQ+ R  K ++Q +LA +INE+ Q
Subjt:  DWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQ

Query:  VVQEYENGKAVPNQTVLAKMEKVLGVKLRGR
        ++ EYE GKA+PN  V+ K+E+ +G+KLRG+
Subjt:  VVQEYENGKAVPNQTVLAKMEKVLGVKLRGR

Q9LV58 Multiprotein-bridging factor 1c1.4e-5681.08Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KATAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKARVEKKM
        MPSR+PGA+ QDWEPVVLHK+K K+Q LRDPKAVN A+R+G AVQTVKKFDAGSNK  K+TA PV N +KL+E TEPAA+DRV AEVRL IQKAR+EKKM
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KATAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKARVEKKM

Query:  SQAELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        SQA+LAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRG+ GK
Subjt:  SQAELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

Q9LXT3 Multiprotein-bridging factor 1b4.9e-3354.74Show/hide
Query:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ
        G + QDWEPVV+ K  P A A RD K VN A RSGA ++TV+KF+AGSNK A++   +N +KLD+ TE  + DRV  E++  I +AR EKK++Q++LA  
Subjt:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ

Query:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRG+
Subjt:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR

Q9SJI8 Multiprotein-bridging factor 1a1.3e-3051.09Show/hide
Query:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ
        G + QDWEPVV+ K    A A RD K VN A RSGA ++TV+KF+AG+NK A++   +N + LD+ TE    +RV  E++  I +AR +KK++Q++LA+ 
Subjt:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ

Query:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRG+
Subjt:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR

Arabidopsis top hitse value%identityAlignment
AT2G42680.1 multiprotein bridging factor 1A9.4e-3251.09Show/hide
Query:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ
        G + QDWEPVV+ K    A A RD K VN A RSGA ++TV+KF+AG+NK A++   +N + LD+ TE    +RV  E++  I +AR +KK++Q++LA+ 
Subjt:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ

Query:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRG+
Subjt:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR

AT3G24500.1 multiprotein bridging factor 1C1.0e-5781.08Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KATAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKARVEKKM
        MPSR+PGA+ QDWEPVVLHK+K K+Q LRDPKAVN A+R+G AVQTVKKFDAGSNK  K+TA PV N +KL+E TEPAA+DRV AEVRL IQKAR+EKKM
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KATAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKARVEKKM

Query:  SQAELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK
        SQA+LAKQINERTQVVQEYENGKAVPNQ VLAKMEKVLGVKLRG+ GK
Subjt:  SQAELAKQINERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK

AT3G24500.2 multiprotein bridging factor 1C1.2e-2971.58Show/hide
Query:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KATAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKAR
        MPSR+PGA+ QDWEPVVLHK+K K+Q LRDPKAVN A+R+G AVQTVKKFDAGSNK  K+TA PV N +KL+E TEPAA+DRV AEVRL +++ R
Subjt:  MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KATAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKAR

AT3G58680.1 multiprotein bridging factor 1B3.5e-3454.74Show/hide
Query:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ
        G + QDWEPVV+ K  P A A RD K VN A RSGA ++TV+KF+AGSNK A++   +N +KLD+ TE  + DRV  E++  I +AR EKK++Q++LA  
Subjt:  GALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATA-APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQ

Query:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRG+
Subjt:  INERTQVVQEYENGKAVPNQTVLAKMEKVLGVKLRGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAGCCGATTCCCCGGAGCCCTAGCTCAAGATTGGGAGCCAGTGGTTCTCCACAAGGCGAAGCCAAAAGCTCAGGCCCTTCGCGATCCGAAAGCAGTGAACCAAGC
GATCCGGTCCGGCGCAGCGGTGCAGACAGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCTACGGCGGCGCCAGTGAACGCGAGGAAACTGGACGAAGGGACCGAAC
CGGCGGCGCTGGACCGCGTGGCGGCGGAGGTGAGACTGACGATTCAGAAGGCTCGAGTGGAGAAGAAGATGAGCCAAGCGGAACTAGCGAAACAGATCAACGAGCGGACT
CAGGTTGTGCAAGAGTATGAAAACGGGAAGGCGGTGCCCAATCAGACGGTTTTGGCGAAGATGGAGAAGGTTTTGGGCGTGAAGCTTCGAGGCAGATCGGGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAGCCGATTCCCCGGAGCCCTAGCTCAAGATTGGGAGCCAGTGGTTCTCCACAAGGCGAAGCCAAAAGCTCAGGCCCTTCGCGATCCGAAAGCAGTGAACCAAGC
GATCCGGTCCGGCGCAGCGGTGCAGACAGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCTACGGCGGCGCCAGTGAACGCGAGGAAACTGGACGAAGGGACCGAAC
CGGCGGCGCTGGACCGCGTGGCGGCGGAGGTGAGACTGACGATTCAGAAGGCTCGAGTGGAGAAGAAGATGAGCCAAGCGGAACTAGCGAAACAGATCAACGAGCGGACT
CAGGTTGTGCAAGAGTATGAAAACGGGAAGGCGGTGCCCAATCAGACGGTTTTGGCGAAGATGGAGAAGGTTTTGGGCGTGAAGCTTCGAGGCAGATCGGGGAAGTGA
Protein sequenceShow/hide protein sequence
MPSRFPGALAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKATAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERT
QVVQEYENGKAVPNQTVLAKMEKVLGVKLRGRSGK