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Lsi11G002740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G002740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHMA domain-containing protein
Genome locationchr11:2799475..2803761
RNA-Seq ExpressionLsi11G002740
SyntenyLsi11G002740
Gene Ontology termsNA
InterPro domainsIPR044526 - Protein SODIUM POTASSIUM ROOT DEFECTIVE 1/2/3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030420.1 Protein SODIUM POTASSIUM ROOT DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-2052.08Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC
        MGK V GIGKVFSCF+N+ ASSS  C + E  F+ KQPLM  Q  +S LL   D I+H NQ      NPK +    S   N      G A  V       
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC

Query:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
        + GVDSYKVD ER+ VVVTGDV  FEV+QC+SKV+SVEILE Q+
Subjt:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

XP_008458177.1 PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo]4.2e-3562.75Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAE
        MGKLV+ IGKVFSCFINTT SSS  C      +E+ +NFDQKQPLMAKQTTS+   LLGFKD I HQN+TL  L  NPK +       V       G A 
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAE

Query:  GVNALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
         V  L    Q GV+S+KVDMERE VVVTGDVFPFEVM+CISKVKSVEILE QD
Subjt:  GVNALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

XP_022946348.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita moschata]2.9e-2052.08Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC
        MGK V GIGKVFSCF+N+ ASSS  C + E  F+ KQPLM  Q  +S LL   D I+H NQ      NPK +    S   N      G A  V       
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC

Query:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
        + GVDSYKVD ER+ VVVTGDV  FEV+QC+SKV+SVEILE Q+
Subjt:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

XP_022999545.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima]3.1e-2253.47Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC
        MGK V GIGKVFSCF+N+ ASSS  C E E  F+ KQPLM  Q  +S LL F D I+H NQ      NPK +    S   N      G A  V       
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC

Query:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
        + GVDS+KVD ER+ VVVTGDV  FEV+QC+SKV+SVEILEHQ+
Subjt:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

XP_031736582.1 uncharacterized protein LOC116402031 [Cucumis sativus]3.5e-3463.33Show/hide
Query:  MGKLVMGIGKVFSCFINTT-ASSSC----LCLENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGV
        MGKLVM IGKVFSCFINTT +S+SC    L +E+ +NFDQKQPLM KQTTS+   LLGFKD I HQN+TL L  NPK +       V       G A  V
Subjt:  MGKLVMGIGKVFSCFINTT-ASSSC----LCLENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGV

Query:  NALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQ
               Q GV+S+KVDMERE VVVTGDVFPFEVMQCISKVKSVEILE Q
Subjt:  NALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQ

TrEMBL top hitse value%identityAlignment
A0A0A0LIU8 Uncharacterized protein9.4e-1768.83Show/hide
Query:  MGKLVMGIGKVFSCFINTT-ASSSC----LCLENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTLALHLNPK
        MGKLVM IGKVFSCFINTT +S+SC    L +E+ +NFDQKQPLM KQTTS+   LLGFKD I HQN+TL L  NPK
Subjt:  MGKLVMGIGKVFSCFINTT-ASSSC----LCLENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTLALHLNPK

A0A1S3C8H9 uncharacterized protein LOC1034976912.0e-3562.75Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAE
        MGKLV+ IGKVFSCFINTT SSS  C      +E+ +NFDQKQPLMAKQTTS+   LLGFKD I HQN+TL  L  NPK +       V       G A 
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAE

Query:  GVNALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
         V  L    Q GV+S+KVDMERE VVVTGDVFPFEVM+CISKVKSVEILE QD
Subjt:  GVNALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

A0A5A7V1Y2 Copper-binding family protein2.0e-3562.75Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAE
        MGKLV+ IGKVFSCFINTT SSS  C      +E+ +NFDQKQPLMAKQTTS+   LLGFKD I HQN+TL  L  NPK +       V       G A 
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGFKDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAE

Query:  GVNALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
         V  L    Q GV+S+KVDMERE VVVTGDVFPFEVM+CISKVKSVEILE QD
Subjt:  GVNALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

A0A6J1G3J1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X11.4e-2052.08Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC
        MGK V GIGKVFSCF+N+ ASSS  C + E  F+ KQPLM  Q  +S LL   D I+H NQ      NPK +    S   N      G A  V       
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC

Query:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
        + GVDSYKVD ER+ VVVTGDV  FEV+QC+SKV+SVEILE Q+
Subjt:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

A0A6J1KFP0 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X11.5e-2253.47Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC
        MGK V GIGKVFSCF+N+ ASSS  C E E  F+ KQPLM  Q  +S LL F D I+H NQ      NPK +    S   N      G A  V       
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLC

Query:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD
        + GVDS+KVD ER+ VVVTGDV  FEV+QC+SKV+SVEILEHQ+
Subjt:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24450.1 Heavy metal transport/detoxification superfamily protein2.6e-1132.88Show/hide
Query:  MGKLVMGIGKVFSCFINTTASSSCLCLE---NEDNFDQKQPLMAKQT-TSSQLLGFKDAI-AHQNQTLALHLNPK--KLRNTFSDFVNTQQISGGGAEGV
        MGKL   IG+V+ C    T   SC CL    +E+   +K+PL+   T  S +++  KD + A   QTLA HL PK  +L+ +   +   +++     + +
Subjt:  MGKLVMGIGKVFSCFINTTASSSCLCLE---NEDNFDQKQPLMAKQT-TSSQLLGFKDAI-AHQNQTLALHLNPK--KLRNTFSDFVNTQQISGGGAEGV

Query:  NALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEI
        + L      GV  YKV++E + VVV G++ P +V++ I KVK+ ++
Subjt:  NALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEI

AT3G53530.1 Chloroplast-targeted copper chaperone protein5.3e-0445.95Show/hide
Query:  KGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        +GV S+ +D   + V VTGD+ P EV+ C+SKVK+ +
Subjt:  KGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVE

AT3G53530.2 Chloroplast-targeted copper chaperone protein3.1e-0447.37Show/hide
Query:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        Q GV S+ +D   + V VTGD+ P EV+ C+SKVK+ +
Subjt:  QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGACAGAGAGGAAGAGAGATCCAGAGAGCGTTGGGAATGGGAAAACTGGTGATGGGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGCTTCCAGTTC
GTGCTTGTGCTTGGAAAATGAAGACAACTTCGATCAGAAACAGCCATTAATGGCTAAACAAACAACATCGTCTCAGCTTCTCGGATTCAAGGATGCGATTGCTCATCAAA
ACCAAACCCTTGCTCTTCATTTGAACCCCAAGAAATTGAGGAATACATTTAGTGATTTTGTAAATACCCAACAAATTTCAGGTGGTGGCGCTGAGGGTGTCAATGCATTG
CAGTGGCTGTGCCAGAAGGGTGTGGATTCATACAAGGTAGATATGGAAAGGGAGATGGTGGTTGTTACTGGAGATGTTTTTCCTTTTGAAGTTATGCAATGCATTTCTAA
AGTGAAAAGTGTAGAGATTCTGGAACATCAAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGACAGAGAGGAAGAGAGATCCAGAGAGCGTTGGGAATGGGAAAACTGGTGATGGGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGCTTCCAGTTC
GTGCTTGTGCTTGGAAAATGAAGACAACTTCGATCAGAAACAGCCATTAATGGCTAAACAAACAACATCGTCTCAGCTTCTCGGATTCAAGGATGCGATTGCTCATCAAA
ACCAAACCCTTGCTCTTCATTTGAACCCCAAGAAATTGAGGAATACATTTAGTGATTTTGTAAATACCCAACAAATTTCAGGTGGTGGCGCTGAGGGTGTCAATGCATTG
CAGTGGCTGTGCCAGAAGGGTGTGGATTCATACAAGGTAGATATGGAAAGGGAGATGGTGGTTGTTACTGGAGATGTTTTTCCTTTTGAAGTTATGCAATGCATTTCTAA
AGTGAAAAGTGTAGAGATTCTGGAACATCAAGACTAA
Protein sequenceShow/hide protein sequence
MRGQRGREIQRALGMGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNAL
QWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD