; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G002880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G002880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRRM domain-containing protein
Genome locationchr11:2994312..2998514
RNA-Seq ExpressionLsi11G002880
SyntenyLsi11G002880
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10694.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]2.9e-16991.22Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFD ERDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         D SGGGGID TDDYDKSLDNDRDQ+ RRDNG+TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_004139331.2 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]2.5e-16587.47Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFD ERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLP+D+ LDR+PELEKTSKDNEKVHDLKLNHDQDWEKDHG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDY--------------DKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKL
         D SGG GID TDDY              DKSLDNDRDQ+ RRDNG+TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KL
Subjt:  EDWSGGGGIDNTDDY--------------DKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKL

Query:  VIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        V+ELQKKAKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  VIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_008457973.1 PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo]3.2e-16890.65Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFD ERDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         D SGGGGID TDDYDKSLDNDRDQ+ RRDN +TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]2.1e-16489.24Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
        SNRFDVERDV+WERDRDRGRDY+HDRYR RGRNNDWSR+RDRSREHDLDKER YEHS DRDLPKD LLDR+PELEK  K NE+  DLKL+H QDWEKDH 
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         DW+GGGGIDNTDDYDKSL +DRDQLSRRDNG+ IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKEISQIEER+GEKGKLV+ELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]6.9e-17192.63Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGR+IEGRVVRVNGVKSR GGRFGRE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHS D D PKDKLLDRDPELEK+SKDNEKVHDLKLNHDQD EK+HG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         DW GGGGIDN DDY+KSLDNDR+QLSRRDNG+T EGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLVIELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

TrEMBL top hitse value%identityAlignment
A0A0A0LIV9 RRM domain-containing protein1.2e-16587.47Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFD ERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLP+D+ LDR+PELEKTSKDNEKVHDLKLNHDQDWEKDHG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDY--------------DKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKL
         D SGG GID TDDY              DKSLDNDRDQ+ RRDNG+TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KL
Subjt:  EDWSGGGGIDNTDDY--------------DKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKL

Query:  VIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        V+ELQKKAKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  VIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A1S3C6W1 zinc finger CCCH domain-containing protein 251.5e-16890.65Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFD ERDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         D SGGGGID TDDYDKSLDNDRDQ+ RRDN +TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A5A7V7D5 Zinc finger CCCH domain-containing protein 251.5e-16890.65Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFD ERDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         D SGGGGID TDDYDKSLDNDRDQ+ RRDN +TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 251.4e-16991.22Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
         NRFD ERDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHG
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         D SGGGGID TDDYDKSLDNDRDQ+ RRDNG+TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa2.3e-16489.24Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG
        SNRFDVERDV+WERDRDRGRDY+HDRYR RGRNNDWSR+RDRSREHDLDKER YEHS DRDLPKD LLDR+PELEK  K NE+  DLKL+H QDWEKDH 
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHG

Query:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA
         DW+GGGGIDNTDDYDKSL +DRDQLSRRDNG+ IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKEISQIEER+GEKGKLV+ELQKKAKKLEDA
Subjt:  EDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA

Query:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B3.4e-1134.05Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------
        +S I+VGGL +D TE  L   FD YG +   ++      ++   T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + + GG          
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------

Query:  ------FGRESNRFDVERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD
               G E   F   R   W RD     D D +R+R     R R  D    RDR  + DL++ER  E   DR +  D   DRD
Subjt:  ------FGRESNRFDVERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD

Q18409 Probable splicing factor, arginine/serine-rich 64.4e-1134.24Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRGGGR------
        D+ +YVGGLP DAT   L  IFD +G +  V V             R   + FV + + R A DA++ +DG  I G   RV    G +  GGGR      
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRGGGR------

Query:  ---FGRESNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDK-------ERGYEHSLDRDLPKDKLLDR
            GR+ + +  +R  S  R RDRGRD   DR R R R+    R R+RSRE +  +       ER   HS  R   + +   R
Subjt:  ---FGRESNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDK-------ERGYEHSLDRDLPKDKLLDR

Q54PM6 Uncharacterized protein DDB_G02844598.0e-0529.6Show/hide
Query:  KDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD
        +D   RT  GR             R  RE +R D +RD   +RDRDR RD D  R R  G   +  RDRDRS   D D++R  +   DRD  +D+  DRD
Subjt:  KDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD

Query:  PELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQL-SRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELR
         + ++  +D ++  D   + D+D +  +  + S     +N ++ + + +N+ ++  +  +N         RD + D S   +   K + E   E+L  +R
Subjt:  PELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQL-SRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELR

Query:  KEISQIEERSGEKGKLVIELQKK
         +I QI+E + +  KL  ELQ K
Subjt:  KEISQIEERSGEKGKLVIELQKK

Q66II8 U1 small nuclear ribonucleoprotein 70 kDa3.1e-0928.79Show/hide
Query:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR----------G
        D   +++V  + YD TE  LRR F++YG +  +      + + N R+ + + Y F+ + + R    A K  DG+ I+GR V V+  + R          G
Subjt:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR----------G

Query:  GGRFG----------RESNRFDV----ERDVSWERDRD---RGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEK
        GG  G          R S R D     ERD   ER+RD   R R+ D +R R R R+ +  R R RSRE + +++R  E S D+D  KDK  D++ + +K
Subjt:  GGRFG----------RESNRFDV----ERDVSWERDRD---RGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEK

Query:  TSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGV
              +    +   ++D +++  ED   G       +  +S+D  +D     D G+
Subjt:  TSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGV

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain2.4e-1234.05Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------
        +S I+VGGL +D TE  L   FD YG +   ++      ++   T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + + GG          
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------

Query:  ------FGRESNRFDVERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD
               G E   F   R   W RD     D D +R+R     R R  D    RDR  + DL++ER  E   DR +  D   DRD
Subjt:  ------FGRESNRFDVERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain2.4e-1234.05Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------
        +S I+VGGL +D TE  L   FD YG +   ++      ++   T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + + GG          
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------

Query:  ------FGRESNRFDVERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD
               G E   F   R   W RD     D D +R+R     R R  D    RDR  + DL++ER  E   DR +  D   DRD
Subjt:  ------FGRESNRFDVERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRD

AT3G50670.1 U1 small nuclear ribonucleoprotein-70K2.4e-0425.32Show/hide
Query:  TVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR---------
        T D   +++V  L Y+++E  ++R F+ YG +  V +      + +  T + K Y F+ + + R    A K  DG+ I+GR V V+  + R         
Subjt:  TVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR---------

Query:  -GGG----RFG------------------RESNRFDVERDVSWE--RDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERG-----YEHSLDRDL
         GGG    R G                   E +R   ER+ S E  ++R+R R+  H++ R R      SRDR R  +H  D+++G      +   DRD 
Subjt:  -GGG----RFG------------------RESNRFDVERDVSWE--RDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERG-----YEHSLDRDL

Query:  PKDK----LLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQ
         +D+      DRD   ++TS+D+++  D     ++D+E    E   GG   +   +Y    +  R      D G T   R +        DD+ +E + +
Subjt:  PKDK----LLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQ

Query:  LEISTERLEELR
            +E  E +R
Subjt:  LEISTERLEELR

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-5443.54Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE
        MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VK       I+NDR+ RGKCYGFVTF+N RSA DAI+DMDG++I GR VRVN V +R GGR    
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRE

Query:  SNRFDVERDVSWERDRDRGRD--YDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKD-KLLDRDPELEKTSKDNEKVHDLKLNHDQDWEK
          R  ++    W+R  DR  D  Y+ DRY  R R  D S+DR +   + ++KER YEHS D +   D  ++DR+   E+    +E           DW  
Subjt:  SNRFDVERDVSWERDRDRGRD--YDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKD-KLLDRDPELEKTSKDNEKVHDLKLNHDQDWEK

Query:  DHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKL
        D       G GI+ T     S    R Q ++R++   ++G   RD  S+SS D  H++KE LE   +  E LR E+  +EER   K  +  ELQKK+K+L
Subjt:  DHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKL

Query:  EDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
        ED LI+ KK  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Subjt:  EDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

AT5G61030.1 glycine-rich RNA-binding protein 31.3e-1344.09Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-GGGRFG
        S +++GG+ Y   EDSLR  F  YG VV  +V      I++  T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-GGGRFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGACGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAA
GGTCAATTCTTCCACCAACCGGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACA
TGGATGGAAGGACTATTGAAGGTCGGGTTGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTCGATGTAGAGAGGGATGTG
AGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGA
TCTGGACAAGGAAAGAGGATATGAACATTCACTAGATCGTGATCTACCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAAGATAATGAGAAAG
TACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGAAGATTGGAGCGGAGGTGGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGAC
AATGATAGAGATCAACTCTCAAGGAGAGATAACGGTGTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGACTATATCCATGAATTAAAGGA
ACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAGGGAAAACTTGTAATTGAGTTGCAAAAGAAAG
CCAAGAAACTGGAAGATGCATTAATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAG
AGACTTAAAACCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA
mRNA sequenceShow/hide mRNA sequence
CCGACATGTCGATTAACGGTTCCTACAAATTAGCAAAAGCGATGGCGAGTTTAACATTGGGAAAGGGAGTCCAGGAGTGTTCTTCTCGACTTTCTTCATTCTCCTCTGAG
ATTGGATTTTCACGGTGGCCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGACGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTAC
GGCGCCGTCGTCGCTGTTAAGGTCAATTCTTCCACCAACCGGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGC
TATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGTCGGGTTGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGT
TCGATGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAGGTAGAAATAATGACTGGTCTAGAGACCGT
GATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATATGAACATTCACTAGATCGTGATCTACCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAAC
TTCAAAAGATAATGAGAAAGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGAAGATTGGAGCGGAGGTGGAGGCATTGATAACACTGATG
ATTATGATAAAAGCCTTGACAATGATAGAGATCAACTCTCAAGGAGAGATAACGGTGTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGAC
TATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAGGGAAAACTTGT
AATTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTAATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGC
TAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAGCCA
ATTGCAATTCATGTCATAAGCCGAAGAGGCTGCATCGTGCAATTTTATTGGCATGAAACTCTTCACCGTGGTTGGGGTATTCATGGTCTTCTGTTCATACTGATGACAAG
TTGTGATGTAGAATTCGTTTGTAACCTAACTTTTCCCAAGATTAAGCTGTCCATTTATTTCATGGTACGTTCACAATCAACTATGCACATGTTTTTACTCGCTATTAGCT
TCTGCAGAGGTTCATCTCACTTTTGTCAAGTTAGATAGGTAAAGATACATTGAAAACTAATTCTGACATCCAAGTAGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGA
ATGTAATTTGAAAGCTTAGGTTGTAATCCTTTTCCAAGGACATTTCGATATATTTCAAACCGAAGTCCTATTGGTATATCATTAAATTTCATCCCTTATCTTTTTACTTA
CAA
Protein sequenceShow/hide protein sequence
MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDV
SWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLD
NDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSE
RLKTSEQELQALVESTAIESDVG