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Lsi11G002940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G002940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPlant/protein
Genome locationchr11:3036416..3036748
RNA-Seq ExpressionLsi11G002940
SyntenyLsi11G002940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061584.1 hypothetical protein E6C27_scaffold41G001490 [Cucumis melo var. makuwa]1.0e-4080.73Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASR
        MTTNLLIFRPI I+ SATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V ES+ S+GCFT EKA+QLRIMTTK NSF DGMYHSAIASR
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASR

Query:  LASDFSNTN
        LASDFSNTN
Subjt:  LASDFSNTN

KAG6599416.1 hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2661.61Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEP----DLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSA
        MTTNLL+FRPIGIRPSA++G+  GHRK  P +  RP W+P   + I++  +P    D +S EK A SRFS G  T EKARQLRIMT+K + FQDGMYHS 
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEP----DLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSA

Query:  IASRLASDFSNT
        +ASRLASDFSNT
Subjt:  IASRLASDFSNT

KAG7030406.1 hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2661.61Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEP----DLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSA
        MTTNLL+FRPIGIRPSA++G+  GHRK  P +  RP W+P   + I++  +P    D +S EK A SRFS G  T EKARQLRIMT+K + FQDGMYHS 
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEP----DLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSA

Query:  IASRLASDFSNT
        +ASRLASDFSNT
Subjt:  IASRLASDFSNT

TYJ97793.1 hypothetical protein E5676_scaffold285G00030 [Cucumis melo var. makuwa]4.4e-2375.34Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEE
        MTTNLLIFRPI I+PSATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V ES+ S+GCF  E
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEE

XP_022998955.1 uncharacterized protein LOC111493481 [Cucurbita maxima]1.5e-2862.28Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDS------TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYH
        MTTNLL+FRPIGIRPSA++G+  GHRKP P +  RP W+P   + I++  +PD +S       EK A SRFS GC T EKARQLRIMT+K + FQDGMYH
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDS------TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYH

Query:  SAIASRLASDFSNT
        S +ASRLASDFSNT
Subjt:  SAIASRLASDFSNT

TrEMBL top hitse value%identityAlignment
A0A0A0LI01 Uncharacterized protein1.2e-2166.29Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKP--QPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNS
        MTTNLLIFRPI I+PSATSGS  GHRKP   P + G PQWR    DYI D+ EPD  ST+KV ES+ S GC TEEKA+QLRIMTT+ N+
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKP--QPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNS

A0A4V3WM73 Uncharacterized protein2.3e-1749.61Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQ---WRP-----GLLDYI--SDSTEPD----------LDSTEKVAESRFSIGCFTEEKARQLRI
        M T+L  FRPIG+R   T     GHRKP  H++       W P        DYI  +DST  D           D  +K A SRFS GCFTEEKARQLR+
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQ---WRP-----GLLDYI--SDSTEPD----------LDSTEKVAESRFSIGCFTEEKARQLRI

Query:  MTTKGNSFQDGMYHSAIASRLASDFSNTN
        MT + +SF D MYHSAIASRLASDF N++
Subjt:  MTTKGNSFQDGMYHSAIASRLASDFSNTN

A0A5A7V2V1 Uncharacterized protein5.0e-4180.73Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASR
        MTTNLLIFRPI I+ SATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V ES+ S+GCFT EKA+QLRIMTTK NSF DGMYHSAIASR
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASR

Query:  LASDFSNTN
        LASDFSNTN
Subjt:  LASDFSNTN

A0A5D3BEV3 Uncharacterized protein2.1e-2375.34Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEE
        MTTNLLIFRPI I+PSATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V ES+ S+GCF  E
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEE

A0A6J1KDY2 uncharacterized protein LOC1114934817.5e-2962.28Show/hide
Query:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDS------TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYH
        MTTNLL+FRPIGIRPSA++G+  GHRKP P +  RP W+P   + I++  +PD +S       EK A SRFS GC T EKARQLRIMT+K + FQDGMYH
Subjt:  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDS------TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYH

Query:  SAIASRLASDFSNT
        S +ASRLASDFSNT
Subjt:  SAIASRLASDFSNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52720.1 unknown protein4.5e-1036.27Show/hide
Query:  PSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAE----------SRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASD
        P+  + S  G   P  +++    W   L    SD    +++S+                +F  GCFTEEKA+QLR  T + ++F D MYHSAIASRLASD
Subjt:  PSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAE----------SRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASD

Query:  FS
         +
Subjt:  FS

AT3G15630.1 unknown protein5.0e-0944.21Show/hide
Query:  ATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPD-------LDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASD
        A+S SD   +KP         W P        S+EPD       L+S    AE R    C TEEKA+QLR  T + ++F D MYHSAIASRLASD
Subjt:  ATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPD-------LDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCACCAATCTACTCATCTTTCGCCCCATCGGAATCCGACCATCTGCCACCTCCGGCTCCGACTTCGGTCACCGGAAACCTCAACCCCACCAGCAAGGGAGGCCTCA
ATGGAGGCCTGGCCTGCTTGACTACATCAGTGACAGCACGGAGCCAGATTTGGATTCAACAGAGAAGGTGGCAGAATCCCGATTCTCAATCGGTTGCTTCACGGAGGAAA
AGGCGAGGCAACTCCGAATTATGACAACGAAGGGTAATTCGTTTCAGGACGGAATGTACCATTCAGCCATTGCATCTCGCCTGGCTTCTGATTTCTCAAACACTAACAAA
TAG
mRNA sequenceShow/hide mRNA sequence
ATGACCACCAATCTACTCATCTTTCGCCCCATCGGAATCCGACCATCTGCCACCTCCGGCTCCGACTTCGGTCACCGGAAACCTCAACCCCACCAGCAAGGGAGGCCTCA
ATGGAGGCCTGGCCTGCTTGACTACATCAGTGACAGCACGGAGCCAGATTTGGATTCAACAGAGAAGGTGGCAGAATCCCGATTCTCAATCGGTTGCTTCACGGAGGAAA
AGGCGAGGCAACTCCGAATTATGACAACGAAGGGTAATTCGTTTCAGGACGGAATGTACCATTCAGCCATTGCATCTCGCCTGGCTTCTGATTTCTCAAACACTAACAAA
TAG
Protein sequenceShow/hide protein sequence
MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNTNK