; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G003040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G003040
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDynein light chain
Genome locationchr11:3153663..3155769
RNA-Seq ExpressionLsi11G003040
SyntenyLsi11G003040
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061594.1 dynein light chain [Cucumis melo var. makuwa]4.6e-6088.89Show/hide
Query:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ
        MATLNKQMKGFKSFYKSRD G RNVS+REPVS +S+DK SIYKYNWLGRKSKKATDQH GGGG    GEEIMGGRK+VVEGRKSVSHVETNLGSVA+FLQ
Subjt:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ

Query:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKLGI
        VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK+ I
Subjt:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKLGI

KAG7030397.1 hypothetical protein SDJN02_08744, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-4979.56Show/hide
Query:  MATLNKQMKGFKSFYKSRDGS-RNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGGEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQVKVL
        MA+LNKQMKGFKSFYKSRDG+  NV  R PVSM+S+DK S+YKYNWL  KSKKA+DQ+GGGGG     GGR +VVEGRKSVS VETNL SVAAFLQVKVL
Subjt:  MATLNKQMKGFKSFYKSRDGS-RNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGGEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQVKVL

Query:  VSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        VSDMPE+MQ++AFRTARRSYDSLEKFSSK+MAYNIKK
Subjt:  VSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

XP_008457739.1 PREDICTED: uncharacterized protein LOC103497357 [Cucumis melo]7.9e-6090.07Show/hide
Query:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ
        MATLNKQMKGFKSFYKSRD G RNVS+REPVS +S+DK SIYKYNWLGRKSKKATDQH GGGG    GEEIMGGRK+VVEGRKSVSHVETNLGSVA+FLQ
Subjt:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ

Query:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
Subjt:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

XP_031736570.1 uncharacterized protein LOC101208065 [Cucumis sativus]3.2e-6186.39Show/hide
Query:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGG-----------EEIMGGRKMVVEGRKSVSHVETNLGS
        MATLNKQMKGFKSFYKSRDG RNVS+REP+SM+S+DK SIYKYNWLGRKSKKAT+QHGGGGGG           EEIMGGRK+VVEGRKSVSHVETNLGS
Subjt:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGG-----------EEIMGGRKMVVEGRKSVSHVETNLGS

Query:  VAAFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        VA+FLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
Subjt:  VAAFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

XP_038890919.1 uncharacterized protein LOC120080348 [Benincasa hispida]3.0e-5991.18Show/hide
Query:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGGEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQVKVLV
        M TLNKQMKGFKSFYKSRDG RNV TREPVS +S+DK SIYKYNWLGRK+KKATDQH  G GGEEIMGGRK+VVEGRKSVSHVETNLGSVAAFLQVKVLV
Subjt:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGGEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQVKVLV

Query:  SDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        SDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
Subjt:  SDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

TrEMBL top hitse value%identityAlignment
A0A0A0LKY0 Uncharacterized protein5.3e-6288.81Show/hide
Query:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGG-------EEIMGGRKMVVEGRKSVSHVETNLGSVAAF
        MATLNKQMKGFKSFYKSRDG RNVS+REP+SM+S+DK SIYKYNWLGRKSKKAT+QHGGGGGG       EEIMGGRK+VVEGRKSVSHVETNLGSVA+F
Subjt:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGG-------EEIMGGRKMVVEGRKSVSHVETNLGSVAAF

Query:  LQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        LQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
Subjt:  LQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

A0A1S3C671 uncharacterized protein LOC1034973573.8e-6090.07Show/hide
Query:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ
        MATLNKQMKGFKSFYKSRD G RNVS+REPVS +S+DK SIYKYNWLGRKSKKATDQH GGGG    GEEIMGGRK+VVEGRKSVSHVETNLGSVA+FLQ
Subjt:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ

Query:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
Subjt:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

A0A5D3BEW1 Dynein light chain2.2e-6088.89Show/hide
Query:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ
        MATLNKQMKGFKSFYKSRD G RNVS+REPVS +S+DK SIYKYNWLGRKSKKATDQH GGGG    GEEIMGGRK+VVEGRKSVSHVETNLGSVA+FLQ
Subjt:  MATLNKQMKGFKSFYKSRD-GSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGG----GEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQ

Query:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKLGI
        VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK+ I
Subjt:  VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKLGI

A0A6J1CN34 uncharacterized protein LOC1110131137.5e-4873.97Show/hide
Query:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQH---------GGGGGGEEIMGGRK-MVVEGRKSVSHVETNLGSV
        MATLNKQ+KGFKSFYKSRDG+R+ +  +P     +D+  +YKYNWLGRKSKKATDQH         GGGG G E MGGRK +VVEGRKSVSHVETNL SV
Subjt:  MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQH---------GGGGGGEEIMGGRK-MVVEGRKSVSHVETNLGSV

Query:  AAFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        AAFLQVKVLVSDMPE+MQ+QAFR+ARRSYDSLEKFSSKHMA++IKK
Subjt:  AAFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

A0A6J1G363 uncharacterized protein LOC1114503664.0e-4978.83Show/hide
Query:  MATLNKQMKGFKSFYKSRDGS-RNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGGEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQVKVL
        MA+LNKQMKGFKSFYKSRDG+  NV  R  VSM+S+DK S+YKYNWL  KSKK +DQ+GGGGG     GGRK+VVEGRKSVS VETNL SVAAFLQVKVL
Subjt:  MATLNKQMKGFKSFYKSRDGS-RNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGGEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQVKVL

Query:  VSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        VSDMPE+MQ++AFRTARRSYDSLEKFSSK+MAYNIKK
Subjt:  VSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G20110.1 Dynein light chain type 1 family protein3.5e-1353.09Show/hide
Query:  GGGGEEIMGGRKMVVEGRKSVSHVE----TNLGSVAAFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK
        GGG  E         EGRKSVSHVE      + + A  L V++L +DMP  MQ  AFR AR + DSLEKFSSKHMA+N+KK
Subjt:  GGGGEEIMGGRKMVVEGRKSVSHVE----TNLGSVAAFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTCTAAACAAGCAAATGAAAGGATTCAAATCCTTTTACAAGTCTCGCGATGGAAGTCGGAACGTATCGACCCGCGAGCCTGTTTCTATGAATTCAATAGATAA
GGCATCAATTTACAAGTATAATTGGTTGGGTAGGAAGTCTAAGAAAGCAACCGATCAGCATGGCGGTGGCGGCGGTGGCGAGGAAATAATGGGAGGAAGAAAAATGGTGG
TTGAAGGTAGGAAGTCAGTTTCTCATGTGGAAACAAATTTGGGATCAGTGGCTGCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAAATTATGCAAATTCAA
GCTTTTAGGACTGCAAGAAGAAGTTATGATAGTTTGGAGAAGTTCAGCTCAAAACATATGGCTTACAATATTAAAAAGCTTGGCATTGTATCGTGGGCTCAAGTTTTGGG
TCATTTGTGA
mRNA sequenceShow/hide mRNA sequence
CAACCACTTCCCTAATCAGTTTCTTAGCTCTCTCTCTCATAATTTAAAAACACCCCCTCTTGGAATGGTTCATATTCTTTATATATATATATAGCTGAATCCAACCTTAT
ATTCTCCTAGAGATCATAATGGCCACTCTAAACAAGCAAATGAAAGGATTCAAATCCTTTTACAAGTCTCGCGATGGAAGTCGGAACGTATCGACCCGCGAGCCTGTTTC
TATGAATTCAATAGATAAGGCATCAATTTACAAGTATAATTGGTTGGGTAGGAAGTCTAAGAAAGCAACCGATCAGCATGGCGGTGGCGGCGGTGGCGAGGAAATAATGG
GAGGAAGAAAAATGGTGGTTGAAGGTAGGAAGTCAGTTTCTCATGTGGAAACAAATTTGGGATCAGTGGCTGCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCT
GAAATTATGCAAATTCAAGCTTTTAGGACTGCAAGAAGAAGTTATGATAGTTTGGAGAAGTTCAGCTCAAAACATATGGCTTACAATATTAAAAAGCTTGGCATTGTATC
GTGGGCTCAAGTTTTGGGTCATTTGTGA
Protein sequenceShow/hide protein sequence
MATLNKQMKGFKSFYKSRDGSRNVSTREPVSMNSIDKASIYKYNWLGRKSKKATDQHGGGGGGEEIMGGRKMVVEGRKSVSHVETNLGSVAAFLQVKVLVSDMPEIMQIQ
AFRTARRSYDSLEKFSSKHMAYNIKKLGIVSWAQVLGHL