; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G003060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G003060
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAlba domain-containing protein
Genome locationchr11:3176673..3178999
RNA-Seq ExpressionLsi11G003060
SyntenyLsi11G003060
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599408.1 hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia]3.2e-5588.57Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_004139317.1 uncharacterized protein At2g34160 [Cucumis sativus]6.5e-5688.57Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEERGEIG+ADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_008457716.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]1.0e-5690Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_022946216.1 uncharacterized protein At2g34160-like [Cucurbita moschata]3.2e-5588.57Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_038890892.1 uncharacterized protein At2g34160-like [Benincasa hispida]1.9e-5588.11Show/hide
Query:  MEEIVEGVNSMNLGS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQK
        MEEIVEGVNSMNL S   DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQK
Subjt:  MEEIVEGVNSMNLGS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQK

Query:  AKIGYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
        A          KIEILLGKT+NFDELMAAAAEERGEIGDADEQ
Subjt:  AKIGYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

TrEMBL top hitse value%identityAlignment
A0A1S3C651 uncharacterized protein At2g34160-like4.9e-5790Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A5D3BH52 DNA/RNA-binding protein Alba-like protein4.9e-5790Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1CNW3 uncharacterized protein At2g34160-like3.5e-5587.14Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIATVVTVAEILKNNGL VEKKIATSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEERG+ GD DEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1G312 uncharacterized protein At2g34160-like1.6e-5588.57Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1KJN4 uncharacterized protein At2g34160-like4.6e-5587.86Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ
                KIEI LGKTENFDELMAAAAEER E GDADEQ
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341603.7e-4677.86Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEER
                KIEI L K+E FDELMAAA EE+
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEER

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein1.4e-4876.6Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI EGVN+MNL  D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQH
                KIEI L K+E FDELMAAA EE+ E  +A EQ+
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEERGEIGDADEQH

AT2G34160.1 Alba DNA/RNA-binding protein2.6e-4777.86Show/hide
Query:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKA  
Subjt:  MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  GYLFTLNEKIEILLGKTENFDELMAAAAEER
                KIEI L K+E FDELMAAA EE+
Subjt:  GYLFTLNEKIEILLGKTENFDELMAAAAEER

AT3G04620.1 Alba DNA/RNA-binding protein8.8e-3568.81Show/hide
Query:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIGYLFTLNEKIEILLG
        +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVVT++EILKNNGLA EKK+ TSTV +KD+++G+ VQKA          KIEI+LG
Subjt:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIGYLFTLNEKIEILLG

Query:  KTENFDELM
        K++ FD L+
Subjt:  KTENFDELM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAATTGTAGAAGGCGTGAATTCCATGAACTTGGGTTCCGATTCATATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAA
TCTCGCTAAGAGGTACATGCAGCAGCATGAGGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACGGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGG
CTGTTGAGAAGAAGATTGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATTGGTTACCTGTTTACCTTAAATGAAAAGATT
GAGATATTGCTGGGGAAAACCGAAAACTTCGATGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGGGAGATAGGCGATGCAGATGAGCAGCATTAA
mRNA sequenceShow/hide mRNA sequence
GCTTATAATAACTCTTCCTTCGACTTCCAATAACTCGAAGAATTAGGGTTTTGAGTTGGAGTTTTTCTAGGTTTTTGCGAGGTTGAGGAAGAGCTTGATGGAAGAAATTG
TAGAAGGCGTGAATTCCATGAACTTGGGTTCCGATTCATATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAATCTCGCTAAGAGG
TACATGCAGCAGCATGAGGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACGGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAA
GATTGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATTGGTTACCTGTTTACCTTAAATGAAAAGATTGAGATATTGCTGG
GGAAAACCGAAAACTTCGATGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGGGAGATAGGCGATGCAGATGAGCAGCATTAAAAGATGGATTACTTTTGCTCTATCTTT
TTATTTTAGCTATAATTTTTGTTAGTGATGTCGAATTTTCCATCAATTATTTGTAGCTCTTTACAGATACGCTAGAAGTTCAGGCACTATTTTTCATCGAGAGTTTGTTC
ATAAATTTCGTTTTAGAGATCTTCACAATTTATTTGGAGTCTTTTACCATATAGAAAACCCAATTTTGTATTGTTATTCTTTTGCTGCCAATCGTTTGCTTTTTTTTCTT
CTTTTTACTAATTTTAATTTCCCTATATATCCTTGCTTAGACATTCAATGGAGTGTTGATTGTGATTGACATGTCAAGAGTAGATATTGAAATGTAATGATATTGGTATT
GAAGCATATTTGAGAGCATTTGAACTATTTTTAATACATGTAATATTGTCAATGGATGAGAATGTAAATTAGACATGGCCCAAGTGATTGAATATTGAATTCTCTCT
Protein sequenceShow/hide protein sequence
MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIGYLFTLNEKI
EILLGKTENFDELMAAAAEERGEIGDADEQH