; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G003090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G003090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr11:3187108..3202847
RNA-Seq ExpressionLsi11G003090
SyntenyLsi11G003090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2632558.1 unnamed protein product [Spirodela intermedia]4.7e-0637.78Show/hide
Query:  LATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI-----------------
        ++ ++R  S  AAA +P VDRI P  I C   N       ++N         T  SF  +     K  +    D  G +K  I                 
Subjt:  LATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI-----------------

Query:  ---QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG
           QK+MVVAH GSSLIIIFTSS LVTEQSF GFG
Subjt:  ---QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG

CAA7408874.1 unnamed protein product [Spirodela intermedia]6.5e-0840.58Show/hide
Query:  PTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI--------------
        PT  AT SR  S  AAA +P VDRI P  I C   N       ++N         T  SF  +     K  +    D  G +K  I              
Subjt:  PTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI--------------

Query:  ------QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG
              QK+MVVAH GSSLIIIFTSS LVTEQSF GFG
Subjt:  ------QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG

KAE8688789.1 hypothetical protein F3Y22_tig00110956pilonHSYRG00228 [Hibiscus syriacus]4.4e-0433.13Show/hide
Query:  NTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPF----LPKRHYKTVI-----------KG
        NTL G V V +   LAT++RFISA AAAAIP  DR RPMAIL          ++N     +   + TW  F F    + +R Y   +             
Subjt:  NTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPF----LPKRHYKTVI-----------KG

Query:  QCDQYGYNKENIQKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFGAELTDF-SKSPSATIAALSRNL
         CD Y     +   +    H                 ++    GAE T F SKSPSAT+A+LS+ L
Subjt:  QCDQYGYNKENIQKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFGAELTDF-SKSPSATIAALSRNL

RWW28438.1 hypothetical protein GW17_00007083 [Ensete ventricosum]1.2e-0633.58Show/hide
Query:  VTPENSSPPFL--LPREYGKRLGL-MNTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSF------DNSMEVHFENVNGGY----YEDS
        V  ++S P ++   P    +  G+ + TL G V V L  + ATESRF SA AAA IP ++++RP+ ILC          SM     N  G Y        
Subjt:  VTPENSSPPFL--LPREYGKRLGL-MNTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSF------DNSMEVHFENVNGGY----YEDS

Query:  IFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENIQ
        + T  +FP L +RH   V+ G  D+   ++E  Q
Subjt:  IFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENIQ

TrEMBL top hitse value%identityAlignment
A0A2N9IA49 Uncharacterized protein9.5e-0554.39Show/hide
Query:  PREYGKRLGL-MNTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSF
        P    K  G+   TL GK+ V  PTA AT++RF+S +AAAAIP+VDR  P+AILC+F
Subjt:  PREYGKRLGL-MNTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSF

A0A444G0P2 Uncharacterized protein5.9e-0733.58Show/hide
Query:  VTPENSSPPFL--LPREYGKRLGL-MNTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSF------DNSMEVHFENVNGGY----YEDS
        V  ++S P ++   P    +  G+ + TL G V V L  + ATESRF SA AAA IP ++++RP+ ILC          SM     N  G Y        
Subjt:  VTPENSSPPFL--LPREYGKRLGL-MNTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSF------DNSMEVHFENVNGGY----YEDS

Query:  IFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENIQ
        + T  +FP L +RH   V+ G  D+   ++E  Q
Subjt:  IFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENIQ

A0A6A2ZBJ4 Uncharacterized protein2.1e-0433.13Show/hide
Query:  NTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPF----LPKRHYKTVI-----------KG
        NTL G V V +   LAT++RFISA AAAAIP  DR RPMAIL          ++N     +   + TW  F F    + +R Y   +             
Subjt:  NTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPF----LPKRHYKTVI-----------KG

Query:  QCDQYGYNKENIQKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFGAELTDF-SKSPSATIAALSRNL
         CD Y     +   +    H                 ++    GAE T F SKSPSAT+A+LS+ L
Subjt:  QCDQYGYNKENIQKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFGAELTDF-SKSPSATIAALSRNL

A0A7I8JNN0 Hypothetical protein2.3e-0637.78Show/hide
Query:  LATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI-----------------
        ++ ++R  S  AAA +P VDRI P  I C   N       ++N         T  SF  +     K  +    D  G +K  I                 
Subjt:  LATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI-----------------

Query:  ---QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG
           QK+MVVAH GSSLIIIFTSS LVTEQSF GFG
Subjt:  ---QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG

A0A7I8LI44 Hypothetical protein3.1e-0840.58Show/hide
Query:  PTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI--------------
        PT  AT SR  S  AAA +P VDRI P  I C   N       ++N         T  SF  +     K  +    D  G +K  I              
Subjt:  PTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHYKTVIKGQCDQYGYNKENI--------------

Query:  ------QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG
              QK+MVVAH GSSLIIIFTSS LVTEQSF GFG
Subjt:  ------QKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATTCCTTCGCCATTTGGGTCACACCTGAGAATTCATCTCCGCCATTTTTGCTTCCTCGGGAGTATGGAAAACGTCTGGGTTTAATGAACACACTTAAAGGCAA
AGTTGCAGTGGATCTACCCACAGCTTTAGCCACTGAGAGCCGTTTCATCTCAGCTAAAGCTGCAGCTGCCATTCCAGAAGTTGACAGGATAAGACCTATGGCAATCCTCT
GTAGTTTTGATAATTCAATGGAAGTTCATTTCGAGAATGTGAATGGAGGATACTATGAAGATTCCATATTTACCTGGTTGTCCTTTCCATTTCTTCCAAAGAGGCATTAC
AAGACGGTCATAAAAGGCCAGTGTGATCAATATGGCTATAACAAAGAAAACATCCAGAAGATTATGGTTGTGGCCCATATTGGTAGCAGTCTCATCATCATCTTTACCTC
CTCTACCCTTGTTACTGAGCAGAGCTTCCAGGGATTTGGAGCTGAGCTTACAGATTTCTCAAAATCTCCCTCTGCTACGATTGCAGCCTTGTCCAGAAATCTAGAAAAGT
TTTCTTGGAGAAACAAGAACCAAATTTCACACCAGAAGGAGAATATTTTTGTGCAGCTAGGAAATCTGGTTTTGGTTTCAGTTACCAGAAACACTCCAAGGAGAGGGATG
CATCAGAAAGATAAGACAAAATGCAGTACCTACGATAAGAGAAGCGGCTGCCCAACCACCGGTTTTAGACCGGTTAATACCAAGACATTTTTCCCTAATTGCACAACAAC
TTCAGTCAAAGCCTCCAGAGCAGCGACCATGACGATCAAAGAAGCCCATCATACCGAATGCCATATAGAATACAACATTTCAGATCAACAGCTTCTCAATGGCATCCTGC
ATTTAGAAGGAAGTACCATGTATCAAGAGGAAGTTGATACTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGATTCCTTCGCCATTTGGGTCACACCTGAGAATTCATCTCCGCCATTTTTGCTTCCTCGGGAGTATGGAAAACGTCTGGGTTTAATGAACACACTTAAAGGCAA
AGTTGCAGTGGATCTACCCACAGCTTTAGCCACTGAGAGCCGTTTCATCTCAGCTAAAGCTGCAGCTGCCATTCCAGAAGTTGACAGGATAAGACCTATGGCAATCCTCT
GTAGTTTTGATAATTCAATGGAAGTTCATTTCGAGAATGTGAATGGAGGATACTATGAAGATTCCATATTTACCTGGTTGTCCTTTCCATTTCTTCCAAAGAGGCATTAC
AAGACGGTCATAAAAGGCCAGTGTGATCAATATGGCTATAACAAAGAAAACATCCAGAAGATTATGGTTGTGGCCCATATTGGTAGCAGTCTCATCATCATCTTTACCTC
CTCTACCCTTGTTACTGAGCAGAGCTTCCAGGGATTTGGAGCTGAGCTTACAGATTTCTCAAAATCTCCCTCTGCTACGATTGCAGCCTTGTCCAGAAATCTAGAAAAGT
TTTCTTGGAGAAACAAGAACCAAATTTCACACCAGAAGGAGAATATTTTTGTGCAGCTAGGAAATCTGGTTTTGGTTTCAGTTACCAGAAACACTCCAAGGAGAGGGATG
CATCAGAAAGATAAGACAAAATGCAGTACCTACGATAAGAGAAGCGGCTGCCCAACCACCGGTTTTAGACCGGTTAATACCAAGACATTTTTCCCTAATTGCACAACAAC
TTCAGTCAAAGCCTCCAGAGCAGCGACCATGACGATCAAAGAAGCCCATCATACCGAATGCCATATAGAATACAACATTTCAGATCAACAGCTTCTCAATGGCATCCTGC
ATTTAGAAGGAAGTACCATGTATCAAGAGGAAGTTGATACTTCATAA
Protein sequenceShow/hide protein sequence
MTDSFAIWVTPENSSPPFLLPREYGKRLGLMNTLKGKVAVDLPTALATESRFISAKAAAAIPEVDRIRPMAILCSFDNSMEVHFENVNGGYYEDSIFTWLSFPFLPKRHY
KTVIKGQCDQYGYNKENIQKIMVVAHIGSSLIIIFTSSTLVTEQSFQGFGAELTDFSKSPSATIAALSRNLEKFSWRNKNQISHQKENIFVQLGNLVLVSVTRNTPRRGM
HQKDKTKCSTYDKRSGCPTTGFRPVNTKTFFPNCTTTSVKASRAATMTIKEAHHTECHIEYNISDQQLLNGILHLEGSTMYQEEVDTS