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Lsi11G003210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G003210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr11:3301367..3302106
RNA-Seq ExpressionLsi11G003210
SyntenyLsi11G003210
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60682.1 hypothetical protein Csa_019276 [Cucumis sativus]1.9e-4179.84Show/hide
Query:  MSSSILSSQSMAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG
        MSSSILSSQSMAMA A   GTVIVVLSF LHKSHPSISS  V+KKKE EKKKKGRK+VHF+DDLAIF ST++L+RKK ++LG SPP GRAPAR LT++GG
Subjt:  MSSSILSSQSMAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG

Query:  GGGGMPANRVALYNGILRDRLVHRIAYSL
        GGGG+PANR ALYNGILR+RLVHRIAYSL
Subjt:  GGGGMPANRVALYNGILRDRLVHRIAYSL

XP_008457539.1 PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo]6.8e-4486.05Show/hide
Query:  SSSILSSQSMAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG
        SSSILSSQSMAMA AALS GTVIVVLS  LHKSHPSISS  VV+KKEMEKKKKGRKRVHF+DDLAIF STEEL+RKK +ILG SP  GRA ARRLT NGG
Subjt:  SSSILSSQSMAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG

Query:  GGGGMPANRVALYNGILRDRLVHRIAYSL
        GGGGMPANR ALYNGILRDRLVHRIAYSL
Subjt:  GGGGMPANRVALYNGILRDRLVHRIAYSL

XP_022946910.1 uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata]1.4e-3373.77Show/hide
Query:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKE----MEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPA
        MAMA+AALSG V VVLSF   KS  S+SS    K+K     ++KKKKGRKRVHFADD A+ STEELQRK GLILGPSPP GRAP   LTS+GGGG GMPA
Subjt:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKE----MEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPA

Query:  NRVALYNGILRDRLVHRIAYSL
        NRVALYNGILRDRLVHR+AYSL
Subjt:  NRVALYNGILRDRLVHRIAYSL

XP_022946911.1 uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata]7.5e-3575.42Show/hide
Query:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVA
        MAMA+AALSG V VVLSF   KS  S+SSV       ++KKKKGRKRVHFADD A+ STEELQRK GLILGPSPP GRAP   LTS+GGGG GMPANRVA
Subjt:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVA

Query:  LYNGILRDRLVHRIAYSL
        LYNGILRDRLVHR+AYSL
Subjt:  LYNGILRDRLVHRIAYSL

XP_038890799.1 uncharacterized protein LOC120080255 [Benincasa hispida]1.3e-5091.41Show/hide
Query:  MSSSILSSQSMAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGG
        MSSSILSSQSMAMA AALSGTVIV+LSFCLHKS PSISS  VVKKKEMEKKKKGRKRVHFADDLAIF TEELQ KKGLILG SPP GR PARRLTS GGG
Subjt:  MSSSILSSQSMAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGG

Query:  GGGMPANRVALYNGILRDRLVHRIAYSL
        GGGMPANRVALYNGILRDRLVHRIAYSL
Subjt:  GGGMPANRVALYNGILRDRLVHRIAYSL

TrEMBL top hitse value%identityAlignment
A0A0A0LIY8 Uncharacterized protein9.0e-4279.84Show/hide
Query:  MSSSILSSQSMAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG
        MSSSILSSQSMAMA A   GTVIVVLSF LHKSHPSISS  V+KKKE EKKKKGRK+VHF+DDLAIF ST++L+RKK ++LG SPP GRAPAR LT++GG
Subjt:  MSSSILSSQSMAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG

Query:  GGGGMPANRVALYNGILRDRLVHRIAYSL
        GGGG+PANR ALYNGILR+RLVHRIAYSL
Subjt:  GGGGMPANRVALYNGILRDRLVHRIAYSL

A0A1S3C5Q6 uncharacterized protein LOC1034972023.3e-4486.05Show/hide
Query:  SSSILSSQSMAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG
        SSSILSSQSMAMA AALS GTVIVVLS  LHKSHPSISS  VV+KKEMEKKKKGRKRVHF+DDLAIF STEEL+RKK +ILG SP  GRA ARRLT NGG
Subjt:  SSSILSSQSMAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG

Query:  GGGGMPANRVALYNGILRDRLVHRIAYSL
        GGGGMPANR ALYNGILRDRLVHRIAYSL
Subjt:  GGGGMPANRVALYNGILRDRLVHRIAYSL

A0A5A7V7G5 Uncharacterized protein1.3e-2969.77Show/hide
Query:  SSSILSSQSMAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG
        SSSILSSQSMAMA AALS GTVIVVLS  LHKSHPSISS                         AIF STEEL+RKK +ILG SP  GRA ARRLT NGG
Subjt:  SSSILSSQSMAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-STEELQRKKGLILGPSPPRGRAPARRLTSNGG

Query:  GGGGMPANRVALYNGILRDRLVHRIAYSL
        GGGGMPANR ALYNGILRDRLVHRIAYSL
Subjt:  GGGGMPANRVALYNGILRDRLVHRIAYSL

A0A6J1G4X1 uncharacterized protein LOC111450851 isoform X23.6e-3575.42Show/hide
Query:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVA
        MAMA+AALSG V VVLSF   KS  S+SSV       ++KKKKGRKRVHFADD A+ STEELQRK GLILGPSPP GRAP   LTS+GGGG GMPANRVA
Subjt:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVA

Query:  LYNGILRDRLVHRIAYSL
        LYNGILRDRLVHR+AYSL
Subjt:  LYNGILRDRLVHRIAYSL

A0A6J1G5C3 uncharacterized protein LOC111450851 isoform X16.9e-3473.77Show/hide
Query:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKE----MEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPA
        MAMA+AALSG V VVLSF   KS  S+SS    K+K     ++KKKKGRKRVHFADD A+ STEELQRK GLILGPSPP GRAP   LTS+GGGG GMPA
Subjt:  MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKE----MEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPA

Query:  NRVALYNGILRDRLVHRIAYSL
        NRVALYNGILRDRLVHR+AYSL
Subjt:  NRVALYNGILRDRLVHRIAYSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTTCAATCTTGAGCTCCCAATCCATGGCTATGGCTTTGGCAGCTCTCTCAGGAACCGTCATCGTTGTCCTTTCCTTCTGCCTCCATAAATCCCACCCCTCAAT
TTCCTCTGTTGAAGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAGAAAGGAAGAAAAAGAGTTCATTTTGCTGATGATTTGGCCATTTTTAGTACTGAAGAATTGCAGA
GAAAAAAAGGCTTAATTTTGGGACCTTCGCCGCCGAGGGGAAGAGCTCCGGCGCGGCGTTTGACGAGCAACGGTGGAGGAGGAGGCGGAATGCCGGCAAATAGAGTAGCG
CTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
CTCTCTCTCACTTTAGAAAATTACACACCACCAACAAACTTTCTTATTCTCCAATTATCTCATTCATCCATTAAACTAATTTTGTCCTCCTTTCCTTTCTTTTTCCTCTC
TTAAGCCAATAATTATTACACATCATGTCTTCTTCAATCTTGAGCTCCCAATCCATGGCTATGGCTTTGGCAGCTCTCTCAGGAACCGTCATCGTTGTCCTTTCCTTCTG
CCTCCATAAATCCCACCCCTCAATTTCCTCTGTTGAAGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAGAAAGGAAGAAAAAGAGTTCATTTTGCTGATGATTTGGCCA
TTTTTAGTACTGAAGAATTGCAGAGAAAAAAAGGCTTAATTTTGGGACCTTCGCCGCCGAGGGGAAGAGCTCCGGCGCGGCGTTTGACGAGCAACGGTGGAGGAGGAGGC
GGAATGCCGGCAAATAGAGTAGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAAGTATATTCAACAACTTTTTCTTTATTTAT
TTAATTTTCTTTTTTCTTTTTCTTTTTTTTTTTCTTAGTAAAAAAATGTCTATTGATGTGTATATTTAGATTGTTTCTCTACTTGTGTCGTAT
Protein sequenceShow/hide protein sequence
MSSSILSSQSMAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVA
LYNGILRDRLVHRIAYSL