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Lsi11G003260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G003260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionaxial regulator YABBY 5
Genome locationchr11:3356594..3374932
RNA-Seq ExpressionLsi11G003260
SyntenyLsi11G003260
Gene Ontology termsGO:0007275 - multicellular organism development (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0050793 - regulation of developmental process (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR006780 - YABBY protein
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139305.1 axial regulator YABBY 5 isoform X1 [Cucumis sativus]5.5e-6093.7Show/hide
Query:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTND-DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFG
        ASNHSHSGSG DHYRVELGSSSK NNKMKMRAPIKN TND DQR+INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFG
Subjt:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTND-DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFG

Query:  LMLDTNNLQTKKDGSEKHLMSVPGLHY
        LMLDTNNLQ+K DGSEKHLMSV GLHY
Subjt:  LMLDTNNLQTKKDGSEKHLMSVPGLHY

XP_008457474.1 PREDICTED: axial regulator YABBY 5 [Cucumis melo]4.0e-5892.25Show/hide
Query:  ASNHSHSGSGADHYRVELG-SSSKCNNKMKMRAPIKNSTND--DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH
        ASNHSHSGSG DHYRVELG SSSK N KMKMRAPIKN TND  DQR+INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH
Subjt:  ASNHSHSGSGADHYRVELG-SSSKCNNKMKMRAPIKNSTND--DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH

Query:  FGLMLDTNNLQTKKDGSEKHLMSVPGLHY
        FGLMLDTNNLQTK DGSEKHLMSV GLHY
Subjt:  FGLMLDTNNLQTKKDGSEKHLMSVPGLHY

XP_022946075.1 axial regulator YABBY 5-like [Cucurbita moschata]1.1e-5788.28Show/hide
Query:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL
        ASNH+HSG  ADHYR ELGSSSKCNNKMKMRAPI+N TN+DQR+INR PEK+QRVPSAYNQFIKEEIQRIKA NPDITHREAFSTAAKNWAHFPHIHFGL
Subjt:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL

Query:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY
        ML+TNNLQ  TK DGSEKHLMSVPGLHY
Subjt:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY

XP_022999176.1 axial regulator YABBY 5-like [Cucurbita maxima]4.0e-5889.06Show/hide
Query:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL
        ASNH+HSG  ADHYR ELGSSSKCNNKMKMRAPI+N TNDDQR+INR PEK+QRVPSAYNQFIKEEIQRIKA NPDITHREAFSTAAKNWAHFPHIHFGL
Subjt:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL

Query:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY
        ML+TNNLQ  TK DGSEKHLMSVPGLHY
Subjt:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY

XP_038889668.1 axial regulator YABBY 5-like [Benincasa hispida]5.9e-6294.66Show/hide
Query:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTND-DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFG
        ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTND DQR+INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFG
Subjt:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTND-DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFG

Query:  LMLDTNNLQTKKD----GSEKHLMSVPGLHY
        LMLDTNNLQTK D    GSEKHLMSVPGLHY
Subjt:  LMLDTNNLQTKKD----GSEKHLMSVPGLHY

TrEMBL top hitse value%identityAlignment
A0A1S3C5K6 axial regulator YABBY 51.9e-5892.25Show/hide
Query:  ASNHSHSGSGADHYRVELG-SSSKCNNKMKMRAPIKNSTND--DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH
        ASNHSHSGSG DHYRVELG SSSK N KMKMRAPIKN TND  DQR+INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH
Subjt:  ASNHSHSGSGADHYRVELG-SSSKCNNKMKMRAPIKNSTND--DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH

Query:  FGLMLDTNNLQTKKDGSEKHLMSVPGLHY
        FGLMLDTNNLQTK DGSEKHLMSV GLHY
Subjt:  FGLMLDTNNLQTKKDGSEKHLMSVPGLHY

A0A5A7V7D7 Axial regulator YABBY 51.9e-5892.25Show/hide
Query:  ASNHSHSGSGADHYRVELG-SSSKCNNKMKMRAPIKNSTND--DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH
        ASNHSHSGSG DHYRVELG SSSK N KMKMRAPIKN TND  DQR+INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH
Subjt:  ASNHSHSGSGADHYRVELG-SSSKCNNKMKMRAPIKNSTND--DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIH

Query:  FGLMLDTNNLQTKKDGSEKHLMSVPGLHY
        FGLMLDTNNLQTK DGSEKHLMSV GLHY
Subjt:  FGLMLDTNNLQTKKDGSEKHLMSVPGLHY

A0A6J1CPK6 axial regulator YABBY 5-like5.8e-5591.13Show/hide
Query:  HSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTND-DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLML
        HSH GS AD Y VELGSSSKCNNKMKMRA IKN T D DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKA NPDITHREAFSTAAKNWAHFPHIHFGLML
Subjt:  HSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTND-DQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLML

Query:  DTNNLQTKKDGSEKHLMSVPGLHY
        +TNNLQTK DGSEKHLMSVPGLHY
Subjt:  DTNNLQTKKDGSEKHLMSVPGLHY

A0A6J1G2S8 axial regulator YABBY 5-like5.6e-5888.28Show/hide
Query:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL
        ASNH+HSG  ADHYR ELGSSSKCNNKMKMRAPI+N TN+DQR+INR PEK+QRVPSAYNQFIKEEIQRIKA NPDITHREAFSTAAKNWAHFPHIHFGL
Subjt:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL

Query:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY
        ML+TNNLQ  TK DGSEKHLMSVPGLHY
Subjt:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY

A0A6J1KCC5 axial regulator YABBY 5-like1.9e-5889.06Show/hide
Query:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL
        ASNH+HSG  ADHYR ELGSSSKCNNKMKMRAPI+N TNDDQR+INR PEK+QRVPSAYNQFIKEEIQRIKA NPDITHREAFSTAAKNWAHFPHIHFGL
Subjt:  ASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL

Query:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY
        ML+TNNLQ  TK DGSEKHLMSVPGLHY
Subjt:  MLDTNNLQ--TKKDGSEKHLMSVPGLHY

SwissProt top hitse value%identityAlignment
A2X7Q3 Protein YABBY 44.6e-2559.63Show/hide
Query:  SSSKCNNKMKMRAPIKNSTNDDQRV-------INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKK-
        SSS  +N   M+ P       +  +        NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDI+HREAFS AAKNWAHFPHIHFGLM D    +T K 
Subjt:  SSSKCNNKMKMRAPIKNSTNDDQRV-------INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKK-

Query:  -DGSEKHLM
         DGSE  L+
Subjt:  -DGSEKHLM

Q6H668 Protein YABBY 44.6e-2559.63Show/hide
Query:  SSSKCNNKMKMRAPIKNSTNDDQRV-------INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKK-
        SSS  +N   M+ P       +  +        NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDI+HREAFS AAKNWAHFPHIHFGLM D    +T K 
Subjt:  SSSKCNNKMKMRAPIKNSTNDDQRV-------INRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKK-

Query:  -DGSEKHLM
         DGSE  L+
Subjt:  -DGSEKHLM

Q8GW46 Axial regulator YABBY 54.3e-3172.92Show/hide
Query:  ADHYRV-ELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTN
        A +Y V E GSSS+ + K+  R  I   T  +QR++NRPPEKRQRVPSAYNQFIKEEIQRIKA NPDI+HREAFSTAAKNWAHFPHIHFGLML++N
Subjt:  ADHYRV-ELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTN

Q8L556 Protein YABBY 34.6e-2554.76Show/hide
Query:  LLLKKQQIHELMAS------NHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREA
        LLL++  +  LMAS      N+S + + A       G ++      K  +P  N+      VINRPPEKRQRVPSAYN+FIK+EIQRIKA NPDI+HREA
Subjt:  LLLKKQQIHELMAS------NHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREA

Query:  FSTAAKNWAHFPHIHFGLMLDTNNLQ
        FS AAKNWAHFPHIHFGLM D   L+
Subjt:  FSTAAKNWAHFPHIHFGLMLDTNNLQ

Q9XFB1 Axial regulator YABBY 31.6e-2568.67Show/hide
Query:  NRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLD---TNNLQTKKDGSEKHLMSVPGLH
        NRPPEKRQRVPSAYN+FIKEEIQRIKA NPDI+HREAFS AAKNWAHFPHIHFGLM D   T     ++   E  +M   G +
Subjt:  NRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLD---TNNLQTKKDGSEKHLMSVPGLH

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein1.6e-2555Show/hide
Query:  IHELMASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVIN-RPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFP
        IH+ +  +  H+ S     R +  SSS+  N +      +N   +  R+   RPPEKRQRVPSAYN+FIKEEIQRIKA NP+I+HREAFSTAAKNWAHFP
Subjt:  IHELMASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVIN-RPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFP

Query:  HIHFGLMLDTNNLQTKKDGS
        HIHFGL LD N    + D S
Subjt:  HIHFGLMLDTNNLQTKKDGS

AT2G26580.1 plant-specific transcription factor YABBY family protein3.0e-3272.92Show/hide
Query:  ADHYRV-ELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTN
        A +Y V E GSSS+ + K+  R  I   T  +QR++NRPPEKRQRVPSAYNQFIKEEIQRIKA NPDI+HREAFSTAAKNWAHFPHIHFGLML++N
Subjt:  ADHYRV-ELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTN

AT2G26580.2 plant-specific transcription factor YABBY family protein3.0e-3272.92Show/hide
Query:  ADHYRV-ELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTN
        A +Y V E GSSS+ + K+  R  I   T  +QR++NRPPEKRQRVPSAYNQFIKEEIQRIKA NPDI+HREAFSTAAKNWAHFPHIHFGLML++N
Subjt:  ADHYRV-ELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTN

AT4G00180.1 Plant-specific transcription factor YABBY family protein1.1e-2668.67Show/hide
Query:  NRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLD---TNNLQTKKDGSEKHLMSVPGLH
        NRPPEKRQRVPSAYN+FIKEEIQRIKA NPDI+HREAFS AAKNWAHFPHIHFGLM D   T     ++   E  +M   G +
Subjt:  NRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLD---TNNLQTKKDGSEKHLMSVPGLH

AT4G00180.2 Plant-specific transcription factor YABBY family protein1.1e-2668.67Show/hide
Query:  NRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLD---TNNLQTKKDGSEKHLMSVPGLH
        NRPPEKRQRVPSAYN+FIKEEIQRIKA NPDI+HREAFS AAKNWAHFPHIHFGLM D   T     ++   E  +M   G +
Subjt:  NRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLD---TNNLQTKKDGSEKHLMSVPGLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGGTTTCTTAGGTTCAATCTCTCATGTCTTTTCCA
AAGCTTTTGTCTTCTACTAAAGAAACAACAGATCCATGAACTGATGGCATCAAACCATAGCCACAGTGGCAGTGGAGCTGATCATTACAGAGTTGAATTGGGATCATCAT
CAAAATGCAACAATAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAAATGATGATCAAAGGGTCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCA
TATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACA
TATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAAAGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA
mRNA sequenceShow/hide mRNA sequence
AGAAGAAGCATATAAAACACATCTTTCTTCTTCCTCTATTTCTTTGCCTATTTTCCCTTCTCTCTCTCATTTCATTTTGCAATTTTTTTTTAAAAAAAAGAATTTCCAGT
CTCTTCTAAAAAGCTTTATATTTTTTGTTAATTTTTTTTTTCCTCTCATAATTTTCAATCATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGTTATATCCCCTG
CAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTG
CTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGGTTTCTTAGGTTCAATCTCTCATGTCTTTTCCAAAGCTTTTGTCTTCTACTAAAGAAACAACAGATCCATGAAC
TGATGGCATCAAACCATAGCCACAGTGGCAGTGGAGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAATAAGATGAAAATGAGAGCACCAATTAAA
AACTCTACAAATGATGATCAAAGGGTCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGC
AACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGA
CCAAGAAAGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGATTGAAGAAATGATGAACATTTGGGGATTATATAATTGAAGGAAAAATTATGATC
TAAGCCAAAAAAAAAAAAAAAAAGAAAACGTTGTAGATCACTTGAAAATTGGGTATTTTCAAGGGTCAAAATTAACAGCCCATGCATATGTTTCCTTATTTTCCTTTCTA
TGTTTATTTGCAATTTAGTTTATTGATTATTAGGGGAAAATGTTTGCCTTCAATTATGAACTGAATTTGCCTTTAATTCCCTTTGTAATGTGTCTGATTTTAATATATAT
GTATGTATCTATATTTTACTGTCAAAGTAAGTTTAATTAATAGAATATTACCTTTCAAT
Protein sequenceShow/hide protein sequence
MWSLQQSLVCEHGCCFSISLMAKFSGFLRFNLSCLFQSFCLLLKKQQIHELMASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDDQRVINRPPEKRQRVPSA
YNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKKDGSEKHLMSVPGLHY