; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G003350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G003350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionActin-related protein 6
Genome locationchr11:3463102..3465191
RNA-Seq ExpressionLsi11G003350
SyntenyLsi11G003350
Gene Ontology termsGO:0006338 - chromatin remodeling (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006970 - response to osmotic stress (biological process)
GO:0009266 - response to temperature stimulus (biological process)
GO:0009845 - seed germination (biological process)
GO:0009910 - negative regulation of flower development (biological process)
GO:0051301 - cell division (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR004000 - Actin family
IPR043129 - ATPase, nucleotide binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ97864.1 actin-related protein 6 [Cucumis melo var. makuwa]2.2e-58100Show/hide
Query:  VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEE
        VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEE
Subjt:  VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEE

Query:  LGSARCRKRFLH
        LGSARCRKRFLH
Subjt:  LGSARCRKRFLH

XP_016900982.1 PREDICTED: actin-related protein 6 [Cucumis melo]3.8e-5892.5Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

XP_023545835.1 actin-related protein 6 [Cucurbita pepo subsp. pepo]2.4e-5790Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P++ GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRP+VPDEC+VKITTQEDPILG WRGGSLLASSPSFEAMC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

XP_031736832.1 actin-related protein 6 [Cucumis sativus]8.4e-5891.67Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILG+WRGGSLLASSPSFEAMC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

XP_038890803.1 LOW QUALITY PROTEIN: actin-related protein 6 [Benincasa hispida]1.1e-5791.67Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDEC+VKITTQEDPILGAWRGGSLLASSPSFEAMC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

TrEMBL top hitse value%identityAlignment
A0A0A0LL11 Uncharacterized protein4.1e-5891.67Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILG+WRGGSLLASSPSFEAMC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

A0A1S4DYD3 actin-related protein 61.8e-5892.5Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

A0A5A7V987 Actin-related protein 61.8e-5892.5Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

A0A5D3BFL4 Actin-related protein 61.1e-58100Show/hide
Query:  VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEE
        VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEE
Subjt:  VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEE

Query:  LGSARCRKRFLH
        LGSARCRKRFLH
Subjt:  LGSARCRKRFLH

A0A6J1CNA2 actin-related protein 62.0e-5790Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDP+LG WRGGSLLASSPSFE MC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCRKRFLH
Subjt:  VTKAEYEELGSARCRKRFLH

SwissProt top hitse value%identityAlignment
A2WNB0 Actin-related protein 64.3e-4973.33Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  L  P++ GMNQAGLAECIVRA+ +CHPHL PVL+E I+LTGGSTLF  F ERLEKELRPLVPD+ QVKI  QEDPILGAWRGGSLLA  P FE+MC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        +TK+EYEE+GS RCR+RF H
Subjt:  VTKAEYEELGSARCRKRFLH

Q54KZ7 Actin-related protein 64.1e-2345.38Show/hide
Query:  SIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAM
        ++P  L  P + GMNQAGLAE IV+++N  + +LH  LY +I+L GGSTLF    ERLE ELR L P++  + I   +DPIL    GG  LA  P +   
Subjt:  SIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAM

Query:  CVTKAEYEELGSARCRKRF
         ++K +YEE G   C K+F
Subjt:  CVTKAEYEELGSARCRKRF

Q5NBI2 Actin-related protein 64.3e-4973.33Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  L  P++ GMNQAGLAECIVRA+ +CHPHL PVL+E I+LTGGSTLF  F ERLEKELRPLVPD+ QVKI  QEDPILGAWRGGSLLA  P FE+MC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        +TK+EYEE+GS RCR+RF H
Subjt:  VTKAEYEELGSARCRKRFLH

Q8LGE3 Actin-related protein 62.3e-5078.33Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  L QP + GMNQAGLAECIVRA+NSCH +L PVLY+SI+LTGGSTLF    ERLE ELRPLVPD   VKITTQEDPILG WRGGSLLASSP FE+MC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCR+RF H
Subjt:  VTKAEYEELGSARCRKRFLH

Q9GZN1 Actin-related protein 62.7e-1936.13Show/hide
Query:  SIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAM
        ++P  L  P + G+ + G+ E IV ++ +    + P  +++IVLTGG++LF  F +R+  E+R L P +  V +   E+PI  AW GG L++ +  FE M
Subjt:  SIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAM

Query:  CVTKAEYEELGSARCRKRF
         VT+ +YEE G + C ++F
Subjt:  CVTKAEYEELGSARCRKRF

Arabidopsis top hitse value%identityAlignment
AT1G49240.1 actin 86.9e-1837.61Show/hide
Query:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV
        P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+  L P   ++K+    +     W GGS+LAS  +F+ M +
Subjt:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV

Query:  TKAEYEELG
        +KAEY+E G
Subjt:  TKAEYEELG

AT2G37620.1 actin 19.1e-1837.61Show/hide
Query:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV
        P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+  L P   ++K+    +     W GGS+LAS  +F+ M +
Subjt:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV

Query:  TKAEYEELG
         KAEY+E G
Subjt:  TKAEYEELG

AT2G37620.2 actin 19.1e-1837.61Show/hide
Query:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV
        P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+  L P   ++K+    +     W GGS+LAS  +F+ M +
Subjt:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV

Query:  TKAEYEELG
         KAEY+E G
Subjt:  TKAEYEELG

AT3G18780.2 actin 26.9e-1837.61Show/hide
Query:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV
        P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+  L P   ++K+    +     W GGS+LAS  +F+ M +
Subjt:  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCV

Query:  TKAEYEELG
        +KAEY+E G
Subjt:  TKAEYEELG

AT3G33520.1 actin-related protein 61.6e-5178.33Show/hide
Query:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
        +P  L QP + GMNQAGLAECIVRA+NSCH +L PVLY+SI+LTGGSTLF    ERLE ELRPLVPD   VKITTQEDPILG WRGGSLLASSP FE+MC
Subjt:  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC

Query:  VTKAEYEELGSARCRKRFLH
        VTKAEYEELGSARCR+RF H
Subjt:  VTKAEYEELGSARCRKRFLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTCTATCATGCTATGTGTATTTCCATCCCATTTGGACTTAGACAACCAGTTGAAACAGGAATGAACCAGGCCGGCTTAGCAGAGTGCATTGTTAGAGCTGTTAA
TTCTTGCCATCCTCATCTGCACCCCGTGCTCTACGAGAGTATTGTTTTGACTGGTGGAAGCACTTTATTTCACAATTTTGCTGAGAGATTAGAGAAGGAGCTCCGTCCTC
TTGTCCCAGATGAGTGTCAAGTGAAGATAACAACTCAAGAAGATCCCATTTTAGGGGCGTGGAGAGGGGGATCACTACTAGCATCTAGTCCTAGTTTTGAAGCAATGTGT
GTTACTAAGGCCGAATACGAGGAACTTGGATCTGCTCGGTGTCGGAAGAGATTTTTACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTCTATCATGCTATGTGTATTTCCATCCCATTTGGACTTAGACAACCAGTTGAAACAGGAATGAACCAGGCCGGCTTAGCAGAGTGCATTGTTAGAGCTGTTAA
TTCTTGCCATCCTCATCTGCACCCCGTGCTCTACGAGAGTATTGTTTTGACTGGTGGAAGCACTTTATTTCACAATTTTGCTGAGAGATTAGAGAAGGAGCTCCGTCCTC
TTGTCCCAGATGAGTGTCAAGTGAAGATAACAACTCAAGAAGATCCCATTTTAGGGGCGTGGAGAGGGGGATCACTACTAGCATCTAGTCCTAGTTTTGAAGCAATGTGT
GTTACTAAGGCCGAATACGAGGAACTTGGATCTGCTCGGTGTCGGAAGAGATTTTTACATTGAGTGCTTGAAAGCATAAAGAGCAATAAGTTTTGTGTAGATTTTCTCTA
AGTTTCTGTGCAAAAACACGATCGTGCACAAGGGGAGGAAGAACTAACTGATCACCCCCTTGATGAAGGAAGGTTCAAGCAAGCTTCAGTGGCGGCTCATTCAAGCATAT
AAAAGTGAGCAGGCGTTTGTGGGTCAATTCTAAGCCATAGCAGGAGCCAGTAGGGACCAACTTTCTGCTGAAAAATTAAGTTTGTATATGAGGGAGGTAGATGCAAAATC
TTCATTGGACTGATTGCAGAGGATTTACTTGAACGTCAATGTGAGCATAACTCAACAAGTTTAAACATATACTCTCAATCAAAAGGTAAGAGGTTCGAATTTTCACTTTT
ATATATTGAACTGGGAAGGAGAATGCAGGAAGAACTTGTATATTTTGATTCTTGCTTTGGATTTGATTTTGGTATTGTATTCCAAGATTTGAATATTGTCTGATTGCCTC
TCACAGCAAAAGTTGTCAGTCAAAAAAGAGTTATTTGCTCTGTTTCTGTTGTCTACTGAATCTGTTTTGGTTGGAAGCTTGAAGATGTATAATTGCTTTGCTGGTATACA
TTTGGCATTCAATCTCTGAATGATGCAGTCTGTCTGTCACATTAATGCTGGGGTTGATCTTGACATCTTATTGTGCCTGTACTTAGGGAACATTTTGATTTTATTTTGTA
AATTCACTCTCTGATTCTTTTTTAAAAGTTATTCTTATTGCCATTTGGCTACCCA
Protein sequenceShow/hide protein sequence
MPFYHAMCISIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMC
VTKAEYEELGSARCRKRFLH