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Lsi11G004170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G004170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionVQ domain-containing protein
Genome locationchr11:4396970..4397260
RNA-Seq ExpressionLsi11G004170
SyntenyLsi11G004170
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063578.1 hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]2.5e-2286.49Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC
        MMIKAS+ALEFRAIVQQLTGFDS+ TPTRRRN KS S+ ARTPSS FHAD EMEVLKFSDD MASLLQFDDQGC
Subjt:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC
KAG6599333.1 hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2265.98Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPS-STFHADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQSSYFFQ
        MMIKASNA EFRAIVQQLTGF S +PTRR NHK P + A+TPS ST HA+ +ME LK SD+M+SLL+FDD+ CF T  +N+L NN  MGFQ+S  FQ
Subjt:  MMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPS-STFHADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQSSYFFQ
KGN60779.1 hypothetical protein Csa_019238 [Cucumis sativus]1.6e-2981Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSDD--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ
        MMIKASNALEFRAIVQQLTGFDS+TPTRRRN K  S+ ARTPS+ FHAD HEMEVLKFSDD  M SLLQFD QGCF T +NNNILPNN IM FQSS FFQ
Subjt:  MMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSDD--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ
TrEMBL top hitse value%identityAlignment
A0A0A0LIA7 VQ domain-containing protein7.7e-3081Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSDD--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ
        MMIKASNALEFRAIVQQLTGFDS+TPTRRRN K  S+ ARTPS+ FHAD HEMEVLKFSDD  M SLLQFD QGCF T +NNNILPNN IM FQSS FFQ
Subjt:  MMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSDD--MASLLQFDDQGCFAT-HNNNILPNNDIMGFQSSYFFQ
A0A5A7V7M1 VQ domain-containing protein1.2e-2286.49Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC
        MMIKAS+ALEFRAIVQQLTGFDS+ TPTRRRN KS S+ ARTPSS FHAD EMEVLKFSDD MASLLQFDDQGC
Subjt:  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDD-MASLLQFDDQGC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGACACTCCGACTCGCCGGAGGAACCATAAATCGCCTTCCAA
CGGTGCCCGAACTCCATCTTCAACGTTTCATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCTGATGACATGGCGTCGCTCCTCCAATTTGACGATCAAGGTTGTTTTG
CAACACACAATAATAATATTCTTCCCAACAATGACATTATGGGATTTCAATCTTCTTATTTTTTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGACACTCCGACTCGCCGGAGGAACCATAAATCGCCTTCCAA
CGGTGCCCGAACTCCATCTTCAACGTTTCATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCTGATGACATGGCGTCGCTCCTCCAATTTGACGATCAAGGTTGTTTTG
CAACACACAATAATAATATTCTTCCCAACAATGACATTATGGGATTTCAATCTTCTTATTTTTTTCAATAG
Protein sequenceShow/hide protein sequence
MMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQSSYFFQ