; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G004180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G004180
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsigma factor binding protein 1, chloroplastic-like
Genome locationchr11:4405287..4405565
RNA-Seq ExpressionLsi11G004180
SyntenyLsi11G004180
Gene Ontology termsNA
InterPro domainsIPR008889 - VQ


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]1.3e-2366.02Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD-----ASASSHVFDPTGVV---EGRYWQGQMEGSFSGFQASSCV
        MMVKANNESEFRAIVQKLTGQHSPD    FDQSV++ NH +YP  P SS P  SFD      SAS  V     +    EGRYW+G+MEGSFSGFQASSCV
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD-----ASASSHVFDPTGVV---EGRYWQGQMEGSFSGFQASSCV

Query:  NIW
        NIW
Subjt:  NIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]8.1e-2369.31Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------SASSHV-FDP-TGVVEGRYWQGQME-GSFSGFQASSCVNI
        MMVKANNESEFRAIVQKLTGQHSPD   DQSV++ NHV+YP  PSS P  SFD       SAS  V FD      EGRYW+G+ME GSFSGFQASSCVNI
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------SASSHV-FDP-TGVVEGRYWQGQME-GSFSGFQASSCVNI

Query:  W
        W
Subjt:  W

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.3e-1152.58Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW
        MMVKA+NE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+       SS  +DP  V       G+M+ S  GFQA S V++W
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.9e-1254.64Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW
        MMVKANNE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+       SS  +DP GV       G+M+ S  GFQA S V++W
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]5.3e-2268.37Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFD-----ASASSHV-FDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW
        MMVKANNESEFRAIVQKLTGQHSP D FDQS E+ N V+YP  PSS+ A SFD     ASAS  V FD         WQG+MEGSFSGFQASSCVN W
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFD-----ASASSHV-FDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein3.9e-2369.31Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------SASSHV-FDP-TGVVEGRYWQGQME-GSFSGFQASSCVNI
        MMVKANNESEFRAIVQKLTGQHSPD   DQSV++ NHV+YP  PSS P  SFD       SAS  V FD      EGRYW+G+ME GSFSGFQASSCVNI
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------SASSHV-FDP-TGVVEGRYWQGQME-GSFSGFQASSCVNI

Query:  W
        W
Subjt:  W

A0A5A7VDH6 VQ motif-containing protein6.1e-2466.02Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD-----ASASSHVFDPTGVV---EGRYWQGQMEGSFSGFQASSCV
        MMVKANNESEFRAIVQKLTGQHSPD    FDQSV++ NH +YP  P SS P  SFD      SAS  V     +    EGRYW+G+MEGSFSGFQASSCV
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD-----ASASSHVFDPTGVV---EGRYWQGQMEGSFSGFQASSCV

Query:  NIW
        NIW
Subjt:  NIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like1.1e-0952.04Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSV----EESNHVYYPSSPSSIPAASFDASA-SSHVFDPTGVV-EGRYWQGQMEGSFSGFQASSCVNIW
        MMVKAN+ESEFR IVQ+LTGQ+SPDD F+       EE NH +YP  PS+  A S D       V    G + EG + Q +M+G FSGFQA SCVN +
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSV----EESNHVYYPSSPSSIPAASFDASA-SSHVFDPTGVV-EGRYWQGQMEGSFSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like1.4e-1254.64Show/hide
Query:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW
        MMVKANNE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+       SS  +DP GV       G+M+ S  GFQA S V++W
Subjt:  MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS-----ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCA
TGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAG
GTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCA
TGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAG
GTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
Protein sequenceShow/hide protein sequence
MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW