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Lsi11G004280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G004280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionproteoglycan 4-like isoform X1
Genome locationchr11:4531059..4531904
RNA-Seq ExpressionLsi11G004280
SyntenyLsi11G004280
Gene Ontology termsGO:0000226 - microtubule cytoskeleton organization (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0008017 - microtubule binding (molecular function)
InterPro domainsIPR044806 - Protein WAVE-DAMPENED 2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063591.1 protein WVD2-like 1 [Cucumis melo var. makuwa]3.6e-3579.81Show/hide
Query:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI
        LPLTRPKSPNL+RRKSCGDSMN S+EEKGKLCTR  RHSF SQK+E  SAN IARKSKAQ NG CHNNE FKHRNHVK + ET+KTT ATTDP  SNVDI
Subjt:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI

Query:  HIQS
         IQS
Subjt:  HIQS

KAG6599322.1 Protein WVD2-like 2, partial [Cucurbita argyrosperma subsp. sororia]8.3e-3272.28Show/hide
Query:  PLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIHIQ
        PLTRPKSPNL+RRKSC D  NL+LEEKGK+C RA RH FG Q++ESAN IARKSKAQ NG C ++E FKHRNH K DNET K + ATTDPH++NVDI IQ
Subjt:  PLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIHIQ

Query:  S
        S
Subjt:  S

XP_004139247.1 protein WVD2-like 1 [Cucumis sativus]1.5e-3681.55Show/hide
Query:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKT-ESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIH
        LPLTRPKSPNL+RRKSCGDSMN S+EEKGKLCTR QRHSF SQK+ ES N +ARKSKAQ NG  HNNE FKHRNHVK D ET+KTTFATTDPH SNVDI 
Subjt:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKT-ESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIH

Query:  IQS
        IQS
Subjt:  IQS

XP_008456211.1 PREDICTED: protein WVD2-like 1 [Cucumis melo]3.6e-3579.81Show/hide
Query:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI
        LPLTRPKSPNL+RRKSCGDSMN S+EEKGKLCTR  RHSF SQK+E  SAN IARKSKAQ NG CHNNE FKHRNHVK + ET+KTT ATTDP  SNVDI
Subjt:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI

Query:  HIQS
         IQS
Subjt:  HIQS

XP_038890840.1 protein WVD2-like 2 [Benincasa hispida]6.1e-3579.25Show/hide
Query:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKT-ESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATT---DPHQSNV
        LPLTRPKSPNL+RRKSC DSMNLS+EEKGK+CTRAQ HSF SQK  ESAN IA KSKAQ NGHCHNNE FKHRNHVK + ETRK TFATT   DPH+SNV
Subjt:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKT-ESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATT---DPHQSNV

Query:  DIHIQS
        DI I+S
Subjt:  DIHIQS

TrEMBL top hitse value%identityAlignment
A0A0A0LIB5 TPX2 domain-containing protein7.1e-3781.55Show/hide
Query:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKT-ESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIH
        LPLTRPKSPNL+RRKSCGDSMN S+EEKGKLCTR QRHSF SQK+ ES N +ARKSKAQ NG  HNNE FKHRNHVK D ET+KTTFATTDPH SNVDI 
Subjt:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKT-ESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIH

Query:  IQS
        IQS
Subjt:  IQS

A0A1S3C3Z4 protein WVD2-like 11.7e-3579.81Show/hide
Query:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI
        LPLTRPKSPNL+RRKSCGDSMN S+EEKGKLCTR  RHSF SQK+E  SAN IARKSKAQ NG CHNNE FKHRNHVK + ET+KTT ATTDP  SNVDI
Subjt:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI

Query:  HIQS
         IQS
Subjt:  HIQS

A0A5D3D4H0 Protein WVD2-like 11.7e-3579.81Show/hide
Query:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI
        LPLTRPKSPNL+RRKSCGDSMN S+EEKGKLCTR  RHSF SQK+E  SAN IARKSKAQ NG CHNNE FKHRNHVK + ET+KTT ATTDP  SNVDI
Subjt:  LPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTE--SANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDI

Query:  HIQS
         IQS
Subjt:  HIQS

A0A6J1K9S8 proteoglycan 4-like isoform X11.5e-3171.29Show/hide
Query:  PLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIHIQ
        PLTRPKSPNL+RRKSC D  NL+LEEKGK+C RA RH FG  ++ESAN IARKSKAQ NG C ++E FKHRNH K DNET K + ATTDPH++NVDI IQ
Subjt:  PLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIHIQ

Query:  S
        S
Subjt:  S

A0A6J1KG09 proteoglycan 4-like isoform X31.5e-3171.29Show/hide
Query:  PLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIHIQ
        PLTRPKSPNL+RRKSC D  NL+LEEKGK+C RA RH FG  ++ESAN IARKSKAQ NG C ++E FKHRNH K DNET K + ATTDPH++NVDI IQ
Subjt:  PLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIHIQ

Query:  S
        S
Subjt:  S

SwissProt top hitse value%identityAlignment
Q9ASW8 Protein WVD2-like 27.3e-0752.94Show/hide
Query:  PLTRPKSPNLSRRKSCGDSMNLSLEE-KGKLCTRAQRHSFGSQKTE------------SANDIARKSK
        PLTRPKSPNL+RRKSC D++N S +E KGK C R  RHS G  K E            S+ D  RKSK
Subjt:  PLTRPKSPNLSRRKSCGDSMNLSLEE-KGKLCTRAQRHSFGSQKTE------------SANDIARKSK

Arabidopsis top hitse value%identityAlignment
AT1G54460.1 TPX2 (targeting protein for Xklp2) protein family5.2e-0852.94Show/hide
Query:  PLTRPKSPNLSRRKSCGDSMNLSLEE-KGKLCTRAQRHSFGSQKTE------------SANDIARKSK
        PLTRPKSPNL+RRKSC D++N S +E KGK C R  RHS G  K E            S+ D  RKSK
Subjt:  PLTRPKSPNLSRRKSCGDSMNLSLEE-KGKLCTRAQRHSFGSQKTE------------SANDIARKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTACCATTAACTCGGCCGAAGTCTCCAAATCTAAGTCGAAGGAAGAGCTGCGGCGATTCGATGAACTTAAGCCTAGAGGAGAAAGGAAAATTATGCACACGAGC
ACAACGCCATAGCTTTGGTAGTCAGAAAACGGAATCAGCTAACGACATAGCCCGCAAAAGCAAAGCACAAGGCAATGGGCATTGCCACAACAATGAACCTTTTAAACATA
GAAACCATGTGAAGTGCGATAACGAGACGAGAAAAACGACTTTTGCAACGACAGATCCACACCAAAGTAATGTAGATATCCACATTCAGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTACCATTAACTCGGCCGAAGTCTCCAAATCTAAGTCGAAGGAAGAGCTGCGGCGATTCGATGAACTTAAGCCTAGAGGAGAAAGGAAAATTATGCACACGAGC
ACAACGCCATAGCTTTGGTAGTCAGAAAACGGAATCAGCTAACGACATAGCCCGCAAAAGCAAAGCACAAGGCAATGGGCATTGCCACAACAATGAACCTTTTAAACATA
GAAACCATGTGAAGTGCGATAACGAGACGAGAAAAACGACTTTTGCAACGACAGATCCACACCAAAGTAATGTAGATATCCACATTCAGTCATGAACATCTGCCTTTCCC
CTATTGTGAGCCAAGAAAAAATGAAAAAGAAGAAGAAAAAAGAAAAAAAAAAAAGAGGGGGAGAAAAGGGTTGATCTTTGAGTTGCTAGTTGTTTCTTTTACCTGAAAGA
AAATAGCTTGTTTTCTTTTCTTTTTACATCTAAAGACTTGACTGAGTGAGTTGTACTAATATGAAATGTATATGCTTTTTTTTTTCTTCTTTTTTACGTTTTTTTCTGAA
AGCTTTAATGATTTTTTATGTTACATATAAGGAGAGATTTTGATTCAGTGTGGATTATTGTGTATACACAGATATACTTTTGCTTTCTATCTCTCTCTGAACTATAACGG
GTGTATTTTTTAGGATACAGTGAAATTAGAGAATGATTTTTTATGATTTTTTGGGTTGTTTCCATTGTTAATGGGTACTGATGTATATTACACAAGAACACGTATGGTTG
GGGATCGAATTTCTAATCTCTTGGTTAAGGTTGTATATTTGAATCAA
Protein sequenceShow/hide protein sequence
MMLPLTRPKSPNLSRRKSCGDSMNLSLEEKGKLCTRAQRHSFGSQKTESANDIARKSKAQGNGHCHNNEPFKHRNHVKCDNETRKTTFATTDPHQSNVDIHIQS