; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G004380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G004380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPSII 6.1 kDa protein
Genome locationchr11:4587389..4588741
RNA-Seq ExpressionLsi11G004380
SyntenyLsi11G004380
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139238.1 photosystem II reaction center W protein, chloroplastic [Cucumis sativus]5.6e-4087.61Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HSRLLLKGSSK+L SP MAAHRLP LQKMKKGGIKC VEEK EGKK SEESMV GTV AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFVVV
        LLGWILA VF ++
Subjt:  LLGWILAGVFVVV

XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]2.1e-3984.82Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HSRLLLKGSSK+LPS  MAA RLP LQKMK G IKC+VEEK EGKKSEESMV GTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFVVV
        LGWILAG+F ++
Subjt:  LGWILAGVFVVV

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]4.4e-3777.98Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P MAAHRLP++QKMKKGGIKC++EEK EGK+S+ES++SGTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVF
        LGWILAG+F
Subjt:  LGWILAGVF

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]3.4e-3779.82Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P MAAHRL ++QKMKKGGIKCR+EEK EGK+S+ESM+SGTV AVA   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVF
        LGWILAG+F
Subjt:  LGWILAGVF

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]2.6e-4591.96Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSRLLLKGSSKVLPSP +AAHRLPMLQKMKKGGIKCRVEEK EGKKSEES+VSGT+ AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFVVV
        LGWILAGVF ++
Subjt:  LGWILAGVFVVV

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein2.7e-4087.61Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HSRLLLKGSSK+L SP MAAHRLP LQKMKKGGIKC VEEK EGKK SEESMV GTV AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFVVV
        LLGWILA VF ++
Subjt:  LLGWILAGVFVVV

A0A1S3C2B0 PSII 6.1 kDa protein1.0e-3984.82Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HSRLLLKGSSK+LPS  MAA RLP LQKMK G IKC+VEEK EGKKSEESMV GTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFVVV
        LGWILAG+F ++
Subjt:  LGWILAGVFVVV

A0A6J1FBR0 PSII 6.1 kDa protein2.1e-3777.98Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P MAAHRLP++QKMKKGGIKC++EEK EGK+S+ES++SGTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVF
        LGWILAG+F
Subjt:  LGWILAGVF

A0A6J1HLU7 PSII 6.1 kDa protein1.5e-3577.98Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P MAAHRL ++QK KKGGIKCR+EEK E K S+ESM+SGTV AVA   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVF
        LGWILAG+F
Subjt:  LGWILAGVF

A0A6J1KED2 PSII 6.1 kDa protein2.6e-3577.68Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LLS SR+LLKGSS +LPSP MAAHRLP   KMK+  IKC+ EEK EGK+SEE MVSGTV AVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFVVV
        LGWIL G+F ++
Subjt:  LGWILAGVFVVV

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic4.2e-1448.67Show/hide
Query:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN
        AST+ +    LL   +  + +P +    LP + K KKGG++C +E     K+   S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNN
Subjt:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFVVV
        LLGWIL GVF ++
Subjt:  LLGWILAGVFVVV

Q41387 Photosystem II reaction center W protein, chloroplastic3.3e-1141.23Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK--SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSN
        +A   L H+  +   SS +L  P+M           K+  + C +E K    +  +  +   G  +  A AA   + PA+ALVDER+STEGTGLPFGLSN
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK--SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILAGVFVVV
        NLLGWIL GVF ++
Subjt:  NLLGWILAGVFVVV

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic6.3e-1044.58Show/hide
Query:  LPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFVVV
        LP ++  +   ++C   ++A    +       +++A+A    A A PA+ALVDER+STEGTGL  GLSNNLLGWIL GVF ++
Subjt:  LPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFVVV

Q9SPI9 Photosystem II reaction center W protein, chloroplastic7.9e-0535.14Show/hide
Query:  MKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVF
        + + G +  V    +       +     +   + A  AA PA ALVDER++ +GTG PFG+++ +LGW+L GVF
Subjt:  MKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVF

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W3.0e-1548.67Show/hide
Query:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN
        AST+ +    LL   +  + +P +    LP + K KKGG++C +E     K+   S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNN
Subjt:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFVVV
        LLGWIL GVF ++
Subjt:  LLGWILAGVFVVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTCTGCTTTCTCACTCCAGGCTTCTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAGCAATGGCAGCTCACAGGTTGCCTATGTTGCAAAAGATGAA
GAAGGGAGGCATAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCAGGCACGGTGGTGGCGGTGGCGATGGCTGCATTGGCGGCAG
CAGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGTT
GTTGTAGATTATGAAAAGATGGGTGTAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTCTGCTTTCTCACTCCAGGCTTCTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAGCAATGGCAGCTCACAGGTTGCCTATGTTGCAAAAGATGAA
GAAGGGAGGCATAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCAGGCACGGTGGTGGCGGTGGCGATGGCTGCATTGGCGGCAG
CAGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGTT
GTTGTAGATTATGAAAAGATGGGTGTAATCTAA
Protein sequenceShow/hide protein sequence
MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFV
VVDYEKMGVI