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Lsi11G004420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G004420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr11:4616883..4620604
RNA-Seq ExpressionLsi11G004420
SyntenyLsi11G004420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_020214655.1 ubiquitin carboxyl-terminal hydrolase 34 [Cajanus cajan]4.2e-0929.79Show/hide
Query:  SRSGGGSHNSLDVLLRQLTGGANHSTLYDHIGRTTQNHRSDGHIQSFVQPDPTLNVNHIHNKNEKQSHHKKAQTQVDSEACFRVMCITENEDEGNEGNPH
        +R+G    +SL V LRQL GGA++  L+  I    + +   G +++FV+ D  LNV  +   N ++ ++++ Q  VDS+     +   ++E++ +E + H
Subjt:  SRSGGGSHNSLDVLLRQLTGGANHSTLYDHIGRTTQNHRSDGHIQSFVQPDPTLNVNHIHNKNEKQSHHKKAQTQVDSEACFRVMCITENEDEGNEGNPH

Query:  VNNNEDPIDVCIRVKIGDCY---DKGVPWKENKKREKSMQW
        VNN ED ID  I V++G+     D+ VP ++  + ++ + +
Subjt:  VNNNEDPIDVCIRVKIGDCY---DKGVPWKENKKREKSMQW
TrEMBL top hitse value%identityAlignment
A0A371GGA5 Uncharacterized protein (Fragment)7.5e-0464Show/hide
Query:  KCAISTALSTSASSHTMKGDFPPSSNVTGFKLLFAANSSTIFPVSVDPVK
        K A STALSTSASS    GD PP+S+ TGFKLL AA    + PVSV+PVK
Subjt:  KCAISTALSTSASSHTMKGDFPPSSNVTGFKLLFAANSSTIFPVSVDPVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATCCACGAAATTATTAGCAGAAGCGGCGGTGGCAGCCATAACAGCCTAGATGTACTTCTCCGGCAGCTCACCGGCGGAGCCAATCACTCCACCCTGTACGACCA
CATCGGCCGCACCACACAAAACCACCGATCCGACGGTCACATACAATCCTTCGTACAACCCGACCCGACCCTGAATGTAAACCACATCCATAACAAGAACGAAAAGCAGA
GCCACCACAAAAAGGCCCAAACCCAAGTTGACTCTGAAGCGTGCTTTAGAGTTATGTGTATAACAGAGAATGAAGATGAGGGAAATGAAGGAAACCCCCATGTAAACAAC
AACGAAGATCCGATCGATGTTTGCATCAGGGTAAAGATAGGCGATTGCTATGACAAAGGCGTTCCATGGAAGGAGAACAAGAAAAGGGAGAAAAGTATGCAATGGGGATC
CATCCATCCTAAAGCCAAGCAGGGTTTTCCAAAGGAGTCACAACAGCCTTCACTTGCAGTTCTTGCTTATTTACCTGAGGACCTTGCTCAATTCCACCTAGGAACGGATC
ACCAACAACGCGGTTTGCAGCTCGGTTCCTTGCTTTTTCTAGAAACTCATCGTATACTTTTTCATGAACAAAAGTACGAGAACCTGCACAGCAGCATTGTCCCTGAAAGC
GAGCGTACTTTTAGTGGAAGATCAATGAAGAGAGCAAAGTGTGCCATCTCCACAGCCTTGTCTACATCAGCATCCTCACATACAATGAAAGGGGATTTTCCACCAAGCTC
CAATGTTACTGGCTTCAAATTGCTTTTTGCAGCTAATTCAAGTACAATCTTCCCTGTTTCAGTTGATCCAGTAAAAGCAAGCTGGGAACAGAGAAACATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATCCACGAAATTATTAGCAGAAGCGGCGGTGGCAGCCATAACAGCCTAGATGTACTTCTCCGGCAGCTCACCGGCGGAGCCAATCACTCCACCCTGTACGACCA
CATCGGCCGCACCACACAAAACCACCGATCCGACGGTCACATACAATCCTTCGTACAACCCGACCCGACCCTGAATGTAAACCACATCCATAACAAGAACGAAAAGCAGA
GCCACCACAAAAAGGCCCAAACCCAAGTTGACTCTGAAGCGTGCTTTAGAGTTATGTGTATAACAGAGAATGAAGATGAGGGAAATGAAGGAAACCCCCATGTAAACAAC
AACGAAGATCCGATCGATGTTTGCATCAGGGTAAAGATAGGCGATTGCTATGACAAAGGCGTTCCATGGAAGGAGAACAAGAAAAGGGAGAAAAGTATGCAATGGGGATC
CATCCATCCTAAAGCCAAGCAGGGTTTTCCAAAGGAGTCACAACAGCCTTCACTTGCAGTTCTTGCTTATTTACCTGAGGACCTTGCTCAATTCCACCTAGGAACGGATC
ACCAACAACGCGGTTTGCAGCTCGGTTCCTTGCTTTTTCTAGAAACTCATCGTATACTTTTTCATGAACAAAAGTACGAGAACCTGCACAGCAGCATTGTCCCTGAAAGC
GAGCGTACTTTTAGTGGAAGATCAATGAAGAGAGCAAAGTGTGCCATCTCCACAGCCTTGTCTACATCAGCATCCTCACATACAATGAAAGGGGATTTTCCACCAAGCTC
CAATGTTACTGGCTTCAAATTGCTTTTTGCAGCTAATTCAAGTACAATCTTCCCTGTTTCAGTTGATCCAGTAAAAGCAAGCTGGGAACAGAGAAACATTTGA
Protein sequenceShow/hide protein sequence
MVIHEIISRSGGGSHNSLDVLLRQLTGGANHSTLYDHIGRTTQNHRSDGHIQSFVQPDPTLNVNHIHNKNEKQSHHKKAQTQVDSEACFRVMCITENEDEGNEGNPHVNN
NEDPIDVCIRVKIGDCYDKGVPWKENKKREKSMQWGSIHPKAKQGFPKESQQPSLAVLAYLPEDLAQFHLGTDHQQRGLQLGSLLFLETHRILFHEQKYENLHSSIVPES
ERTFSGRSMKRAKCAISTALSTSASSHTMKGDFPPSSNVTGFKLLFAANSSTIFPVSVDPVKASWEQRNI