CuGenDBv2

Gene ID	Lsi11G004750
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 48
Genome location	chr11:5015891..5018798
RNA-Seq Expression	Lsi11G004750
Synteny	Lsi11G004750
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0016579 - protein deubiquitination (biological process) GO:0043130 - ubiquitin binding (molecular function)
InterPro domains	IPR021772 - WDR48/Bun107

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33906.1 nucleotide binding protein [Cucumis melo subsp. melo]

1.1e-39

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

KAA0063633.1 WD repeat-containing protein 48 [Cucumis melo var. makuwa]

1.1e-39

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

XP_004139215.1 WD repeat-containing protein 48 [Cucumis sativus]

1.1e-39

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

XP_022999257.1 WD repeat-containing protein 48-like [Cucurbita maxima]

1.1e-39

92.05

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
        ++ + ++KMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ

XP_038890074.1 WD repeat-containing protein 48 [Benincasa hispida]

6.6e-40

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN  PDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJF0 WD_REPEATS_REGION domain-containing protein

5.4e-40

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

A0A5A7V6A0 WD repeat-containing protein 48

5.4e-40

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

A0A5D3D4C5 WD repeat-containing protein 48

5.4e-40

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

A0A6J1KAE3 WD repeat-containing protein 48-like

5.4e-40

92.05

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
        ++ + ++KMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ

E5GBR4 Nucleotide binding protein

5.4e-40

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Query:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

SwissProt top hits

e value

%identity

Alignment

B4GIJ0 WD repeat-containing protein 48 homolog

7.1e-05

35.38

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Query:  LSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGRHY
        L ++  DG+      P ++    IE+ CN+ V+ P+M L TVR++IWK+  DL   Y+  Q  +Y
Subjt:  LSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGRHY

Q28YY2 WD repeat-containing protein 48 homolog

7.1e-05

35.38

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Query:  LSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGRHY
        L ++  DG+      P ++    IE+ CN+ V+ P+M L TVR++IWK+  DL   Y+  Q  +Y
Subjt:  LSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGRHY

Q32PG3 WD repeat-containing protein 48

9.3e-05

57.14

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Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q5F3K4 WD repeat-containing protein 48

9.3e-05

57.14

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Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q8TAF3 WD repeat-containing protein 48

9.3e-05

57.14

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Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Arabidopsis top hits

e value

%identity

Alignment

AT3G05090.1 Transducin/WD40 repeat-like superfamily protein

9.8e-26

63.33

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Query:  FSLQKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        + ++KMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN+QVLSPDMSLATVR Y+WKKPEDL+LNYRV   R
Subjt:  FSLQKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

AT3G05090.2 Transducin/WD40 repeat-like superfamily protein

9.8e-26

63.33

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Query:  FSLQKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        + ++KMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN+QVLSPDMSLATVR Y+WKKPEDL+LNYRV   R
Subjt:  FSLQKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

Sequences

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CDS sequence

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ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGATTGCCAACACAGAGTTGCATCCAGTCACCTGACAATCTA
CTGTGTAATTTCTAGTGCACTTGATTACTTGTTGCTGAAATTTAGTTTACAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTG
GACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAAATCTTATGCAATAATCAGGTCTTGTCTCCTGAT
ATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTTCAAGGCAGGCATTACAAATCTGAACATCATCAGCCCAT
TTCTCAATTCTGCATTGTTTATCGAACCTGCCGAGAATTTTACTGGTCAACATTTCGAAGGGGAAACCGCAGGCGCTATAGATTTTTCGATCTTGATCTTGCCTGCAAGG
TGTAA

mRNA sequence

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Protein sequence

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MDNLWAEGKFYVQPNPLTALGLEDCQHRVASSHLTIYCVISSALDYLLLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPD
MSLATVRNYIWKKPEDLVLNYRVVQGRHYKSEHHQPISQFCIVYRTCREFYWSTFRRGNRRRYRFFDLDLACKV

Lsi11G004750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome