; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G004810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G004810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent RNA helicase, putative
Genome locationchr11:5087161..5088720
RNA-Seq ExpressionLsi11G004810
SyntenyLsi11G004810
Gene Ontology termsGO:0000390 - spliceosomal complex disassembly (biological process)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR011709 - Domain of unknown function DUF1605


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143025.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Momordica charantia]8.8e-71100Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

XP_022946177.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita moschata]2.0e-7099.25Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

XP_022965541.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita maxima]2.0e-7099.25Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

XP_023537932.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pepo subsp. pepo]2.0e-7099.25Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

XP_038890443.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Benincasa hispida]8.8e-71100Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

TrEMBL top hitse value%identityAlignment
A0A0A0LG89 Uncharacterized protein9.5e-7199.25Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKV+D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

A0A5A7V8X9 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH59.5e-7199.25Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKV+D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

A0A6J1CMK5 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH54.3e-71100Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

A0A6J1HLZ3 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH59.5e-7199.25Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

A0A6J1KEH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH59.5e-7199.25Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVAD
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

SwissProt top hitse value%identityAlignment
A1Z9L3 ATP-dependent RNA helicase DHX81.7e-5372.73Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MD++KLDVVSAGKN  +I+KAI +GFF +AA+KDPQEGYRTLV++Q VYIHPSSALF RQP+WVIYHELV TTKEYMREVT IDPKWLVE AP FF+ +D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR
        PTK+SK K+ +R+EPLY++Y EPN+WR+S+ R
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR

A2A4P0 ATP-dependent RNA helicase DHX83.5e-5471.54Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MD++KLDVVS GK+  +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKEYMREVT IDP+WLVE AP FFKV+D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSK
        PTK+SK+K+Q+R+EPLY+RY EPN+WR+S+
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSK

Q14562 ATP-dependent RNA helicase DHX83.5e-5471.54Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MD++KLDVVS GK+  +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKEYMREVT IDP+WLVE AP FFKV+D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSK
        PTK+SK+K+Q+R+EPLY+RY EPN+WR+S+
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSK

Q38953 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH51.1e-7196.24Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVV+AGKNFT+IRKAITAGFFFH ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYH+LVMTTKEYMREVTVIDPKWLVELAPRFFKV+D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

Q54F05 ATP-dependent RNA helicase dhx85.8e-5774.24Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MD+YKLD++SAG+N+T+I+KAI +GFF +A++KDP EGY+TLVE QPVYIHPSS LF R PDWVIYHELVMTTKEYMREV  IDPKWLVELAP+FFK +D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR
        P K+SKRKR+E+IEPLYD+Y++PN+WR SKR+
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR

Arabidopsis top hitse value%identityAlignment
AT1G32490.1 RNA helicase family protein8.7e-2443.52Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        +++ ++D+ S       +RK+I AGFF H A+      YRT+   Q V+IHP+S L Q  P WV+YHELV+T+KEYMR+VT + P+WL+ELAP ++++ D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRK
            + +K
Subjt:  PTKMSKRK

AT1G32490.2 RNA helicase family protein8.7e-2443.52Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        +++ ++D+ S       +RK+I AGFF H A+      YRT+   Q V+IHP+S L Q  P WV+YHELV+T+KEYMR+VT + P+WL+ELAP ++++ D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRK
            + +K
Subjt:  PTKMSKRK

AT2G35340.1 helicase domain-containing protein6.6e-2443.52Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        +++ ++DV S       IRK+I AGFF H A+      YRT+   Q V+IHP+S L Q  P WV+YH+LV+T+KEYMR+VT + P+WL+E+AP ++++ D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRK
            + +K
Subjt:  PTKMSKRK

AT3G26560.1 ATP-dependent RNA helicase, putative7.7e-7396.24Show/hide
Query:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD
        MDKYKLDVV+AGKNFT+IRKAITAGFFFH ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYH+LVMTTKEYMREVTVIDPKWLVELAPRFFKV+D
Subjt:  MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVAD

Query:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
        PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Subjt:  PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

AT4G18465.1 RNA helicase family protein2.9e-1948.78Show/hide
Query:  IRKAITAGFFFHAARKDPQEG--YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFK
        +RKA+TAGFF +A R +P     Y+T+  ++ VYIHPSS LF+  P WV+Y  +V T ++YMR V  I+P WL E+AP F++
Subjt:  IRKAITAGFFFHAARKDPQEG--YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGTACAAATTGGATGTGGTGAGTGCTGGCAAGAACTTCACACAGATAAGGAAGGCAATTACAGCAGGGTTCTTTTTCCATGCAGCCAGAAAGGATCCACAAGA
GGGTTATCGGACCCTAGTCGAGAACCAACCGGTTTATATCCATCCGAGCAGTGCGTTATTCCAAAGACAACCCGACTGGGTCATATACCACGAGCTGGTCATGACAACAA
AAGAATACATGCGTGAAGTGACAGTCATAGATCCCAAATGGCTTGTTGAATTAGCTCCAAGATTCTTCAAAGTTGCAGACCCTACGAAGATGAGTAAGCGAAAGCGACAA
GAGCGGATTGAACCACTCTATGACAGATATCACGAACCAAACTCTTGGCGTTTGAGTAAGAGACGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGTACAAATTGGATGTGGTGAGTGCTGGCAAGAACTTCACACAGATAAGGAAGGCAATTACAGCAGGGTTCTTTTTCCATGCAGCCAGAAAGGATCCACAAGA
GGGTTATCGGACCCTAGTCGAGAACCAACCGGTTTATATCCATCCGAGCAGTGCGTTATTCCAAAGACAACCCGACTGGGTCATATACCACGAGCTGGTCATGACAACAA
AAGAATACATGCGTGAAGTGACAGTCATAGATCCCAAATGGCTTGTTGAATTAGCTCCAAGATTCTTCAAAGTTGCAGACCCTACGAAGATGAGTAAGCGAAAGCGACAA
GAGCGGATTGAACCACTCTATGACAGATATCACGAACCAAACTCTTGGCGTTTGAGTAAGAGACGAGCTTAATCAATGTGTTTTTCTTTTTTCTGTGCTATATTTACCTG
ACTATGATGTAGGTTTGGAGGCTTGCCATAAAATGTATATATCCTGTTGTATAATCTCTCCTGAGGGTGTAAAGCCATTAAAAGACCTATGCATTTATCTATCAGAAAAG
TTTTGTCTCCCTCCACTGCCGTTGGATCATTGCGTTATGTTATTTGATTTGATAATTCATTTTGCCACTACGGGGACTTTATTGATAGAAGTCATTTTTATCTCTCA
Protein sequenceShow/hide protein sequence
MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQ
ERIEPLYDRYHEPNSWRLSKRRA