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Lsi11G005030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G005030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTIR-NBS-LRR disease resistance protein
Genome locationchr11:5340501..5341014
RNA-Seq ExpressionLsi11G005030
SyntenyLsi11G005030
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0007165 - signal transduction (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003953 - NAD+ nucleosidase activity (molecular function)
GO:0043531 - ADP binding (molecular function)
InterPro domainsIPR000157 - Toll/interleukin-1 receptor homology (TIR) domain
IPR035897 - Toll/interleukin-1 receptor homology (TIR) domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADI99937.1 TIR-NBS-LRR-AAA+ATPase class resistance protein [Cucumis sativus]3.9e-3480Show/hide
Query:  QYDSSKWIIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYK
        Q + SK +I F  GEDTRSNFTSHLNMALRQRGINVFIDN +SRG+EISASL EAIE+SKISIVIIS+NYASSSWCLNELV+IIMC + +GQ+VLPIFYK
Subjt:  QYDSSKWIIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYK

XP_011649005.1 TMV resistance protein N isoform X1 [Cucumis sativus]2.1e-3589.89Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GEDTRSNFTSHLNMALRQRGINVFIDN+LSRGEEISASLLEAIE SKISIVIISENYASS WCLNELV+IIMCNK +GQ+VLPIFYK +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

XP_011649006.1 TMV resistance protein N isoform X2 [Cucumis sativus]2.1e-3589.89Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GEDTRSNFTSHLNMALRQRGINVFIDN+LSRGEEISASLLEAIE SKISIVIISENYASS WCLNELV+IIMCNK +GQ+VLPIFYK +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

XP_038889763.1 disease resistance protein RPV1-like isoform X1 [Benincasa hispida]4.2e-3682Show/hide
Query:  KW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        KW   +     GEDTRSNFTSHLNMALRQRGINVFIDN+LSRGEEIS SLLEAIE+SKISIVIISENYASSSWCLNELV+IIMCNKF GQ+VLP+FYK +
Subjt:  KW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

XP_038889774.1 disease resistance protein RPV1-like isoform X2 [Benincasa hispida]4.2e-3682Show/hide
Query:  KW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        KW   +     GEDTRSNFTSHLNMALRQRGINVFIDN+LSRGEEIS SLLEAIE+SKISIVIISENYASSSWCLNELV+IIMCNKF GQ+VLP+FYK +
Subjt:  KW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

TrEMBL top hitse value%identityAlignment
A0A0A0LJK8 TIR domain-containing protein1.0e-3589.89Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GEDTRSNFTSHLNMALRQRGINVFIDN+LSRGEEISASLLEAIE SKISIVIISENYASS WCLNELV+IIMCNK +GQ+VLPIFYK +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

A0A1S3BZV9 TMV resistance protein N-like isoform X23.3e-3483.15Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GEDTRSNFTSHLNM LRQRGINVFID +LSRGEEIS+SLLEAIE+SK+SI++ISE+YASSSWCLNELV+IIMCNK +GQ+VLPIFYK +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

A0A1S3C0Y9 TMV resistance protein N-like isoform X13.3e-3483.15Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GEDTRSNFTSHLNM LRQRGINVFID +LSRGEEIS+SLLEAIE+SK+SI++ISE+YASSSWCLNELV+IIMCNK +GQ+VLPIFYK +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

D9I8I7 TIR-NBS-LRR-AAA+ATPase class resistance protein1.9e-3480Show/hide
Query:  QYDSSKWIIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYK
        Q + SK +I F  GEDTRSNFTSHLNMALRQRGINVFIDN +SRG+EISASL EAIE+SKISIVIIS+NYASSSWCLNELV+IIMC + +GQ+VLPIFYK
Subjt:  QYDSSKWIIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYK

Q84KB3 MRGH633.3e-3483.15Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GEDTRSNFTSHLNM LRQRGINVFID +LSRGEEIS+SLLEAIE+SK+SI++ISE+YASSSWCLNELV+IIMCNK +GQ+VLPIFYK +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

SwissProt top hitse value%identityAlignment
F4J339 Probable disease resistance protein RPP16.3e-1950.56Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        G D R  F SH+  + R++GI+ FIDN + R + I   L EAI+ SKI+IV++S  YASSSWCL+EL EI+ C +  GQIV+ IFY+ +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

F4JWM0 Disease resistance-like protein DSC21.5e-2052.81Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GED R  F SH+    + +GI  FID+E+ RGE I   L +AI +SKI+IV++S+NYASSSWCLNELVEI+ C +  GQ V+ +FY+ +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

Q9SZ66 Disease resistance-like protein DSC12.3e-2149.53Show/hide
Query:  LQISQYDSSKWIIFF-LTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVL
        ++ S   S+++ +F    G DTR+NFT HL  ALR RGI+ FID+ L RG+ ++A L + IEKSKI+I++ S NYA+S+WCL ELV+I+ C     Q+V+
Subjt:  LQISQYDSSKWIIFF-LTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVL

Query:  PIFYKYE
        PIFYK +
Subjt:  PIFYKYE

V9M2S5 Disease resistance protein RPV16.8e-2158.14Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFY
        GEDTR NFT HL  AL +RGI  F D+ L RGE I+  LL+AIE+S+ S+++ SENYA S WCL+ELV+I+ C K  G  V PIFY
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFY

V9M398 Disease resistance protein RUN12.6e-2057.3Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFK---GQIVLPIFY
        GEDTR NFT HL  AL +RGI  F D++L RGE I+  LL+AIE+S+ S+++ SENYA S WCL+ELV+I+ C+K K   G  V PIFY
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFK---GQIVLPIFY

Arabidopsis top hitse value%identityAlignment
AT1G65850.1 Disease resistance protein (TIR-NBS-LRR class) family4.4e-2349.06Show/hide
Query:  SQYDSSKW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLP
        S   S KW   +     GED R  F SH++   +++GI  FIDNE+ RGE I   ++ AI +SKI+IV++S NYASSSWCL+ELVEI+ C +   QIV+P
Subjt:  SQYDSSKW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLP

Query:  IFYKYE
        IFY+ +
Subjt:  IFYKYE

AT1G65850.2 Disease resistance protein (TIR-NBS-LRR class) family4.4e-2349.06Show/hide
Query:  SQYDSSKW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLP
        S   S KW   +     GED R  F SH++   +++GI  FIDNE+ RGE I   ++ AI +SKI+IV++S NYASSSWCL+ELVEI+ C +   QIV+P
Subjt:  SQYDSSKW---IIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLP

Query:  IFYKYE
        IFY+ +
Subjt:  IFYKYE

AT3G04220.1 Disease resistance protein (TIR-NBS-LRR class) family4.8e-2252.81Show/hide
Query:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        GED R +F SH+    +++GI  F+DN + RGE I   L+ AI  SKI+I+++S+NYASSSWCL+ELVEII C +  GQ V+ IFYK +
Subjt:  GEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE

AT4G12010.1 Disease resistance protein (TIR-NBS-LRR class) family1.7e-2249.53Show/hide
Query:  LQISQYDSSKWIIFF-LTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVL
        ++ S   S+++ +F    G DTR+NFT HL  ALR RGI+ FID+ L RG+ ++A L + IEKSKI+I++ S NYA+S+WCL ELV+I+ C     Q+V+
Subjt:  LQISQYDSSKWIIFF-LTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVL

Query:  PIFYKYE
        PIFYK +
Subjt:  PIFYKYE

AT5G11250.1 Disease resistance protein (TIR-NBS-LRR class)2.2e-2253.33Show/hide
Query:  TGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE
        +GED R +F SH+ M  ++ GI  F+DNE+ RGE I   LL AI  SKI+I+++S NYASS WCL+ELVEI+ C +  GQ V+ IFYK +
Subjt:  TGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCACGCTTCAGATTTCTCAATATGATTCGAGCAAGTGGATAATCTTCTTCCTCACAGGGGAAGATACTCGTTCCAACTTTACGAGTCATCTTAATATGGCTTTACGTCA
AAGAGGAATCAATGTTTTTATAGATAACGAGCTTTCGAGGGGTGAAGAAATTTCCGCATCTCTTTTGGAAGCTATTGAAAAATCGAAGATCTCGATTGTTATAATCTCTG
AAAATTATGCATCTTCGAGTTGGTGTTTGAATGAATTGGTGGAAATCATTATGTGTAACAAATTCAAAGGACAAATTGTTTTACCAATTTTTTACAAATATGAAAACAAA
GTGGAACATTTGGAGAAGCATTTGCCAAACTTGAAGTTAGATTCTTCAACAAGATGCAAGCATGGAGGGAGGCTC
mRNA sequenceShow/hide mRNA sequence
CTCACGCTTCAGATTTCTCAATATGATTCGAGCAAGTGGATAATCTTCTTCCTCACAGGGGAAGATACTCGTTCCAACTTTACGAGTCATCTTAATATGGCTTTACGTCA
AAGAGGAATCAATGTTTTTATAGATAACGAGCTTTCGAGGGGTGAAGAAATTTCCGCATCTCTTTTGGAAGCTATTGAAAAATCGAAGATCTCGATTGTTATAATCTCTG
AAAATTATGCATCTTCGAGTTGGTGTTTGAATGAATTGGTGGAAATCATTATGTGTAACAAATTCAAAGGACAAATTGTTTTACCAATTTTTTACAAATATGAAAACAAA
GTGGAACATTTGGAGAAGCATTTGCCAAACTTGAAGTTAGATTCTTCAACAAGATGCAAGCATGGAGGGAGGCTC
Protein sequenceShow/hide protein sequence
LTLQISQYDSSKWIIFFLTGEDTRSNFTSHLNMALRQRGINVFIDNELSRGEEISASLLEAIEKSKISIVIISENYASSSWCLNELVEIIMCNKFKGQIVLPIFYKYENK
VEHLEKHLPNLKLDSSTRCKHGGRL