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Lsi11G005330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G005330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNucleolar GTPase
Genome locationchr11:5612115..5614727
RNA-Seq ExpressionLsi11G005330
SyntenyLsi11G005330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139183.2 uncharacterized protein LOC101210593 isoform X3 [Cucumis sativus]1.0e-5373.97Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALCKIDGPIDCKALLDSIN I NLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPP IQHS+NR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

XP_011648807.1 uncharacterized protein LOC101210593 isoform X1 [Cucumis sativus]1.0e-5373.97Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALCKIDGPIDCKALLDSIN I NLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPP IQHS+NR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

XP_011648808.1 uncharacterized protein LOC101210593 isoform X2 [Cucumis sativus]1.0e-5373.97Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALCKIDGPIDCKALLDSIN I NLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPP IQHS+NR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

XP_038887011.1 uncharacterized protein LOC120077179 isoform X1 [Benincasa hispida]8.5e-5678.08Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRVVQVLRASVVLYKPWILLG+V PS LISLLNECS IWLSSGL GALCKIDGPIDCKALLDSINVIQNLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

XP_038887012.1 uncharacterized protein LOC120077179 isoform X2 [Benincasa hispida]8.5e-5678.08Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRVVQVLRASVVLYKPWILLG+V PS LISLLNECS IWLSSGL GALCKIDGPIDCKALLDSINVIQNLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

TrEMBL top hitse value%identityAlignment
A0A0A0LJK9 Uncharacterized protein5.0e-5473.97Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALCKIDGPIDCKALLDSIN I NLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPP IQHS+NR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

A0A1S3C046 uncharacterized protein LOC103495090 isoform X12.3e-5172.6Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRVVQVLRAS VLYKPWILLG+VDP++LISL NECS+IWLSSGLV ALCKIDGPIDCKALLDSIN I NLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPP IQ+  NR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

A0A6J1G4X0 uncharacterized protein LOC1114507295.5e-5369.68Show/hide
Query:  DQFMSAILSGKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW-------
        + ++ + L GKRY+CALGEIYRVVQVLRASV LYKPWILLG+VDPS LISLLNECS+IW SSGLV ALCK DGPIDCKALLDSIN IQNLDEW       
Subjt:  DQFMSAILSGKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW-------

Query:  ------------------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                          G+DLVVW+GE+YFLKLANLWANLI RDPPFIQH NNR
Subjt:  ------------------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

A0A6J1KC64 uncharacterized protein LOC1114935914.7e-5273.29Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GKRY+CALGEIYRVVQVLRASV LYKPWILLG+VDPS LISLLNECS+IW SSGLV ALCKIDGPIDCKALLDSIN IQNLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 G+ LVVW+GE+YFLKLANLWANLI RDPPFIQH NNR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

A6YTC8 Nucleolar GTPase2.3e-5172.6Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK+Y+CALGEIYRVVQVLRAS VLYKPWILLG+VDP++LISL NECS+IWLSSGLV ALCKIDGPIDCKALLDSIN I NLDEW                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR
                 GMDLVVWNGENYFLKLANLWANLIGRDPP IQ+  NR
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54920.2 unknown protein1.6e-2344.2Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK Y  ++GEIYRVV++LRAS  LYKPWILL     S+++++L+EC  +WLSSGLV AL           LL+SI  I  +D +                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPP
                 G+  V WNGE+Y L LAN+WANLI RDPP
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPP

AT1G54920.3 unknown protein1.6e-2344.2Show/hide
Query:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------
        GK Y  ++GEIYRVV++LRAS  LYKPWILL     S+++++L+EC  +WLSSGLV AL           LL+SI  I  +D +                
Subjt:  GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEW----------------

Query:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPP
                 G+  V WNGE+Y L LAN+WANLI RDPP
Subjt:  ---------GMDLVVWNGENYFLKLANLWANLIGRDPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATATTGCAAGTTGCAAATTAGCTGACCAGTTCATGTCTGCCATTCTTTCAGGAAAACGATATGTCTGCGCCCTCGGAGAGATTTATAGGGTAGTTCAAGTGCT
TAGAGCCTCAGTTGTACTTTACAAGCCATGGATACTGTTAGGTCGGGTTGATCCCAGTGACTTGATTTCTCTTCTGAATGAGTGCTCCGATATTTGGTTGAGTTCAGGAC
TCGTTGGAGCTCTCTGCAAGATAGATGGTCCTATTGATTGCAAAGCATTATTGGATTCTATCAATGTTATTCAGAATCTTGATGAATGGGGTATGGATTTGGTGGTCTGG
AATGGGGAGAACTACTTTTTAAAGCTCGCAAACTTATGGGCAAATCTAATAGGTCGTGATCCTCCATTCATTCAGCACTCGAATAATAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAATATTGCAAGTTGCAAATTAGCTGACCAGTTCATGTCTGCCATTCTTTCAGGAAAACGATATGTCTGCGCCCTCGGAGAGATTTATAGGGTAGTTCAAGTGCT
TAGAGCCTCAGTTGTACTTTACAAGCCATGGATACTGTTAGGTCGGGTTGATCCCAGTGACTTGATTTCTCTTCTGAATGAGTGCTCCGATATTTGGTTGAGTTCAGGAC
TCGTTGGAGCTCTCTGCAAGATAGATGGTCCTATTGATTGCAAAGCATTATTGGATTCTATCAATGTTATTCAGAATCTTGATGAATGGGGTATGGATTTGGTGGTCTGG
AATGGGGAGAACTACTTTTTAAAGCTCGCAAACTTATGGGCAAATCTAATAGGTCGTGATCCTCCATTCATTCAGCACTCGAATAATAGGTGATAAGAGGATCGATCCAT
ATTGTTTTGTATAATAGTCTGGATGATGTAGCTGTCGCTTTTTTCTCCAAACAAGGTTTCATCAGCTCTCGTCCCAGCTGCTCATCCATGTCGATGTTTGATACGAAATG
CTAGATGATTTCACTTCTTGAGATGAAATTAAGAAAGGAGAACACTTTCTGGGTTTTCAAGAAGATCAAATAAATTGATCTAGGTCTCTTGGGATCCAGTTTCCAACACA
TACACCACCATTCTTTAGGAGAGCTACTGCTTAGCAACTCAACGATGTTTCATATCTGTATCATATTATGATTTATGCTGTCCAGAACTGGATGGATTCATACATAGAGA
GAATTTCATCATGTTGAAGATCATTTTTGTTTCAATATATATAACATCTTTTTAATCCTTTTGGTTCCTGTTTAAATTTTATGTTTCTAGTTCAGAGTCCCAGAATCAGA
ACAAGATCTGTTTACCAGAGATGAACATTGTACACTGTATATATAGTTTTTTCCAGAATCATTGTGGTATTTATTGTATGTGAAGGTAATTTATTTCATTTTTTCCCATT
GTTTT
Protein sequenceShow/hide protein sequence
MDNIASCKLADQFMSAILSGKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEWGMDLVVW
NGENYFLKLANLWANLIGRDPPFIQHSNNR