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Lsi11G005350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G005350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:5616613..5617873
RNA-Seq ExpressionLsi11G005350
SyntenyLsi11G005350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68113.1 hypothetical protein VITISV_023356 [Vitis vinifera]2.9e-0778.95Show/hide
Query:  IPRPSNASLQLPSVRVWKSPFDFPKALVCILEDAVSKG
        +PRPSNAS Q+PS RV++SP DFP ALVCILEDAVSKG
Subjt:  IPRPSNASLQLPSVRVWKSPFDFPKALVCILEDAVSKG
TrEMBL top hitse value%identityAlignment
A5BN80 Reverse transcriptase domain-containing protein1.4e-0778.95Show/hide
Query:  IPRPSNASLQLPSVRVWKSPFDFPKALVCILEDAVSKG
        +PRPSNAS Q+PS RV++SP DFP ALVCILEDAVSKG
Subjt:  IPRPSNASLQLPSVRVWKSPFDFPKALVCILEDAVSKG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGCAGCAAAGAAATTCCAAGACCATCAAATGCATCACTCCAACTGCCCTCTGTCAGGGTCTGGAAAAGCCCTTTCGATTTTCCGAAGGCGCTTGTCTGCATTCT
TGAGGATGCTGTATCCAAGGGCTACACGATGAAAAACCAAGAGAGTTTCTTCGATTTGTTCTTGTTCATACATGACTTCATAAAGAGACTTGAATCTTCATATAGCAATG
ACGTTCATCAAACTATGCAGCTCAATGTGGCAATTGATAATGTAATAAAAGCAAACCTATCTTTTAACAAGCAGGACAGACTGAAACTAGAAGTGGATGGACAAAAAAGA
TATTTTCAACCTGAGTTAAAATGGCATTGCAAGCTCCAGCAGCAGCAGCAAATTCCAAGGAGCCTGAAACAGCCGCAAATGCTTTCAAACTATCACAAAATTCCCACAGC
TCACCAACCAACCACTTCAGAAGCGCTCGAATTCTATAGATCATTCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGCAGCAAAGAAATTCCAAGACCATCAAATGCATCACTCCAACTGCCCTCTGTCAGGGTCTGGAAAAGCCCTTTCGATTTTCCGAAGGCGCTTGTCTGCATTCT
TGAGGATGCTGTATCCAAGGGCTACACGATGAAAAACCAAGAGAGTTTCTTCGATTTGTTCTTGTTCATACATGACTTCATAAAGAGACTTGAATCTTCATATAGCAATG
ACGTTCATCAAACTATGCAGCTCAATGTGGCAATTGATAATGTAATAAAAGCAAACCTATCTTTTAACAAGCAGGACAGACTGAAACTAGAAGTGGATGGACAAAAAAGA
TATTTTCAACCTGAGTTAAAATGGCATTGCAAGCTCCAGCAGCAGCAGCAAATTCCAAGGAGCCTGAAACAGCCGCAAATGCTTTCAAACTATCACAAAATTCCCACAGC
TCACCAACCAACCACTTCAGAAGCGCTCGAATTCTATAGATCATTCGATTAA
Protein sequenceShow/hide protein sequence
MAGSKEIPRPSNASLQLPSVRVWKSPFDFPKALVCILEDAVSKGYTMKNQESFFDLFLFIHDFIKRLESSYSNDVHQTMQLNVAIDNVIKANLSFNKQDRLKLEVDGQKR
YFQPELKWHCKLQQQQQIPRSLKQPQMLSNYHKIPTAHQPTTSEALEFYRSFD