; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G005520 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G005520
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box domain LysM domain containing protein
Genome locationchr11:5776482..5776949
RNA-Seq ExpressionLsi11G005520
SyntenyLsi11G005520
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0031408 - oxylipin biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily
IPR045030 - LysM and putative peptidoglycan-binding domain-containing protein 1-4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047988.1 putative linoleate 9S-lipoxygenase 5 [Cucumis melo var. makuwa]1.8e-7092.96Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNPSP V S P QPPPAD STA+LSPMNSHFFALSCRDILRLIFE+LSI DLARSSCVCRLWHSVASDQEIV+GAFKAPWKVKD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

XP_004139174.1 F-box protein At1g55000 [Cucumis sativus]3.2e-7294.37Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNPSPA+ S PPQPPPAD S A+LSPMNSHFFALSCRDILRLIFENLSI DLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

XP_008454526.2 PREDICTED: probable linoleate 9S-lipoxygenase 5 [Cucumis melo]1.8e-7092.96Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNPSP V S P QPPPAD STA+LSPMNSHFFALSCRDILRLIFE+LSI DLARSSCVCRLWHSVASDQEIV+GAFKAPWKVKD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

XP_022150720.1 F-box protein At1g55000 [Momordica charantia]3.2e-6488.03Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNP+ AV S    PP ADSSTAVLSPMNSHFFALSCRDILRLIFE LSI DLARSSCVCRLW SVASD EIV+GAFKAPWK+KD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        V+GKPSS SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

XP_038877035.1 F-box protein At1g55000 [Benincasa hispida]7.9e-7193.66Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNPSP VQSLPP+PPP DSS  VLSPMNSHF ALSCRDILRLIFENLSI DLARSSCV RLWHSVASDQEIVSGAFKAPWKVKD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

TrEMBL top hitse value%identityAlignment
A0A0A0LFS6 LysM domain-containing protein1.6e-7294.37Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNPSPA+ S PPQPPPAD S A+LSPMNSHFFALSCRDILRLIFENLSI DLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

A0A1S3BZK8 Lipoxygenase8.5e-7192.96Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNPSP V S P QPPPAD STA+LSPMNSHFFALSCRDILRLIFE+LSI DLARSSCVCRLWHSVASDQEIV+GAFKAPWKVKD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

A0A5A7TYE5 Lipoxygenase8.5e-7192.96Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNPSP V S P QPPPAD STA+LSPMNSHFFALSCRDILRLIFE+LSI DLARSSCVCRLWHSVASDQEIV+GAFKAPWKVKD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

A0A6J1D9A3 F-box protein At1g550001.6e-6488.03Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD
        MGCCC+QDDDVEILRHLNP+ AV S    PP ADSSTAVLSPMNSHFFALSCRDILRLIFE LSI DLARSSCVCRLW SVASD EIV+GAFKAPWK+KD
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKD

Query:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        V+GKPSS SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  VVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

A0A6J1FH66 F-box protein At1g550002.7e-6488.81Show/hide
Query:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPP-ADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVK
        MGCCC++DDDVEILRHL+PSP VQS P Q P   DSSTAVLSPMNSHFFALSCRDILRLIFE LSI DLARSSCV RLW+SVASDQEIVSGAFKAPWKVK
Subjt:  MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPP-ADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVK

Query:  DVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        DV+GKPSS SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
Subjt:  DVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

SwissProt top hitse value%identityAlignment
Q9FZ32 F-box protein At1g550001.4e-3062.77Show/hide
Query:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        AL CRD L +IF+ L+++DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV
Subjt:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

Arabidopsis top hitse value%identityAlignment
AT1G55000.1 peptidoglycan-binding LysM domain-containing protein1.0e-3162.77Show/hide
Query:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        AL CRD L +IF+ L+++DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV
Subjt:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

AT1G55000.2 peptidoglycan-binding LysM domain-containing protein1.0e-3162.77Show/hide
Query:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        AL CRD L +IF+ L+++DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV
Subjt:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

AT1G55000.3 peptidoglycan-binding LysM domain-containing protein1.0e-3162.77Show/hide
Query:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV
        AL CRD L +IF+ L+++DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV
Subjt:  ALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQV

AT2G05970.1 F-box family protein with a domain of unknown function (DUF295)6.8e-0442.55Show/hide
Query:  CRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKV
        C D+LR +FE LS SDL R+  VC  WHS  + +  V    + PW +
Subjt:  CRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATGCTGTTGCGAACAAGATGACGACGTTGAGATCCTCAGGCACCTCAATCCCTCGCCCGCCGTTCAGTCTCTCCCGCCCCAACCTCCACCGGCCGATTCCTCCAC
TGCCGTACTGTCTCCGATGAATTCTCACTTTTTCGCCCTCTCCTGCCGCGACATCCTCCGCCTCATCTTCGAGAACCTTTCCATCTCCGATTTGGCTCGTTCCAGCTGCG
TTTGCCGTCTTTGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGCAAGCCGAGCTCCTGGAGCTTC
TGGAGAGATAATTGCCTTGGGAAGTTTGCGATCTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTCAAGTATTCGGTTCAGGTGTGGGGTAACAATGT
TGTTGTTGTCTTATTCATGAGAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATGCTGTTGCGAACAAGATGACGACGTTGAGATCCTCAGGCACCTCAATCCCTCGCCCGCCGTTCAGTCTCTCCCGCCCCAACCTCCACCGGCCGATTCCTCCAC
TGCCGTACTGTCTCCGATGAATTCTCACTTTTTCGCCCTCTCCTGCCGCGACATCCTCCGCCTCATCTTCGAGAACCTTTCCATCTCCGATTTGGCTCGTTCCAGCTGCG
TTTGCCGTCTTTGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGCAAGCCGAGCTCCTGGAGCTTC
TGGAGAGATAATTGCCTTGGGAAGTTTGCGATCTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTCAAGTATTCGGTTCAGGTGTGGGGTAACAATGT
TGTTGTTGTCTTATTCATGAGAAAGTGA
Protein sequenceShow/hide protein sequence
MGCCCEQDDDVEILRHLNPSPAVQSLPPQPPPADSSTAVLSPMNSHFFALSCRDILRLIFENLSISDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSF
WRDNCLGKFAISHRILRGDSLASLAVKYSVQVWGNNVVVVLFMRK