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Lsi11G005530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G005530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLysM domain-containing protein
Genome locationchr11:5777096..5779473
RNA-Seq ExpressionLsi11G005530
SyntenyLsi11G005530
Gene Ontology termsNA
InterPro domainsIPR045030 - LysM and putative peptidoglycan-binding domain-containing protein 1-4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139174.1 F-box protein At1g55000 [Cucumis sativus]6.6e-6396.88Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        VTDIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYIEMDAIAKREVAVLYLDGIPMT HLYGKVT EQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSISNG+PRAALTEFAEDIRWERHMSIA
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

XP_022150720.1 F-box protein At1g55000 [Momordica charantia]5.1e-6396.09Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIP THHLYGKVTCEQGMSSVQVNK+VLHSLSRSMMVDDETA+YY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSIS+GDPRAALTEFAEDIRWERHMSIA
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

XP_022937590.1 F-box protein At1g55000 [Cucurbita moschata]1.5e-5992.19Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP THHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSIS+GDPRAALTEFAEDIRWERHM +A
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

XP_022965884.1 F-box protein At1g55000 [Cucurbita maxima]2.6e-5991.41Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSRER+LIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP THHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSIS+GDPRAALTEFAEDIRWERHM +A
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

XP_038877035.1 F-box protein At1g55000 [Benincasa hispida]8.7e-6395.31Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        VTDIKRLNNM+SDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIP+THHLYGK TCE+GMSSVQVNKRVLH LSRSMMVDDETAQYY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSISNGDPRAALTEFAEDIRWERH+SIA
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

TrEMBL top hitse value%identityAlignment
A0A0A0LFS6 LysM domain-containing protein3.2e-6396.88Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        VTDIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYIEMDAIAKREVAVLYLDGIPMT HLYGKVT EQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSISNG+PRAALTEFAEDIRWERHMSIA
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

A0A6J1D9A3 F-box protein At1g550002.5e-6396.09Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIP THHLYGKVTCEQGMSSVQVNK+VLHSLSRSMMVDDETA+YY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSIS+GDPRAALTEFAEDIRWERHMSIA
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

A0A6J1FH66 F-box protein At1g550007.4e-6092.19Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP THHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSIS+GDPRAALTEFAEDIRWERHM +A
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

A0A6J1HS58 F-box protein At1g550001.3e-5991.41Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSRER+LIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP THHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSIA
        LSIS+GDPRAALTEFAEDIRWERHM +A
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSIA

A0A7N2L511 LysM domain-containing protein7.7e-4168.46Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPM--THHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQ
        V DIKRLNNMMSDHGIYSRERLLIPI NP+IL+N  CYIE+D  AKREVAVLYL+G P   + H+  K+T EQG       ++VL SL RSM VDD TAQ
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPM--THHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQ

Query:  YYLSISNGDPRAALTEFAEDIRWERHMSIA
        YYLSISNG+PRAAL+EF+ED++WER MS+A
Subjt:  YYLSISNGDPRAALTEFAEDIRWERHMSIA

SwissProt top hitse value%identityAlignment
Q9FZ32 F-box protein At1g550003.2e-3659.84Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P         T +Q   S    +R++ SL RSM VDD TA YY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSI
        L+I+ GDPR+AL+EF+ D+RWER   +
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSI

Arabidopsis top hitse value%identityAlignment
AT1G55000.1 peptidoglycan-binding LysM domain-containing protein2.3e-3759.84Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P         T +Q   S    +R++ SL RSM VDD TA YY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSI
        L+I+ GDPR+AL+EF+ D+RWER   +
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSI

AT1G55000.2 peptidoglycan-binding LysM domain-containing protein2.3e-3759.84Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P         T +Q   S    +R++ SL RSM VDD TA YY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSI
        L+I+ GDPR+AL+EF+ D+RWER   +
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSI

AT1G55000.3 peptidoglycan-binding LysM domain-containing protein2.3e-3759.84Show/hide
Query:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY
        V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P         T +Q   S    +R++ SL RSM VDD TA YY
Subjt:  VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYY

Query:  LSISNGDPRAALTEFAEDIRWERHMSI
        L+I+ GDPR+AL+EF+ D+RWER   +
Subjt:  LSISNGDPRAALTEFAEDIRWERHMSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTACAGACATAAAACGTCTGAACAACATGATGAGCGACCATGGCATATACTCGAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATACTCATTAACAG
TATATGCTACATCGAGATGGATGCTATTGCGAAACGAGAAGTTGCAGTATTGTATTTGGATGGAATCCCCATGACCCATCATTTGTATGGTAAAGTGACATGCGAACAGG
GTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCGTTGAGTCGGAGCATGATGGTCGATGACGAAACCGCTCAATATTACTTATCTATTTCCAATGGCGATCCT
CGAGCAGCTCTTACTGAATTCGCTGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTACAGACATAAAACGTCTGAACAACATGATGAGCGACCATGGCATATACTCGAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATACTCATTAACAG
TATATGCTACATCGAGATGGATGCTATTGCGAAACGAGAAGTTGCAGTATTGTATTTGGATGGAATCCCCATGACCCATCATTTGTATGGTAAAGTGACATGCGAACAGG
GTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCGTTGAGTCGGAGCATGATGGTCGATGACGAAACCGCTCAATATTACTTATCTATTTCCAATGGCGATCCT
CGAGCAGCTCTTACTGAATTCGCTGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAG
Protein sequenceShow/hide protein sequence
MAVTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDP
RAALTEFAEDIRWERHMSIA