CuGenDBv2

Gene ID	Lsi11G005740
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA polymerase zeta catalytic subunit
Genome location	chr11:6089006..6089770
RNA-Seq Expression	Lsi11G005740
Synteny	Lsi11G005740
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0006260 - DNA replication (biological process) GO:0042276 - error-prone translesion synthesis (biological process) GO:0005634 - nucleus (cellular component) GO:0016035 - zeta DNA polymerase complex (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR030559 - DNA polymerase zeta catalytic subunit

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6599224.1 DNA polymerase zeta catalytic subunit, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-28

95.59

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

KAG7030229.1 DNA polymerase zeta catalytic subunit [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-28

95.59

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

XP_022999038.1 DNA polymerase zeta catalytic subunit [Cucurbita maxima]

6.9e-28

94.12

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKV+EVPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

XP_023545347.1 LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit [Cucurbita pepo subsp. pepo]

2.4e-28

94.12

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVP+LRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

XP_038890093.1 DNA polymerase zeta catalytic subunit isoform X1 [Benincasa hispida]

6.9e-28

95.59

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGD QSESSVFSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFW0 DNA polymerase

2.2e-27

92.65

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGDSQSES VFSVRIVSIDYYLAPPI GL +SYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

A0A5D3CRJ8 DNA polymerase

6.3e-27

89.71

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGDSQ+ES VFSVR+VSIDYYLAPPI GL +SYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

A0A6J1DA95 DNA polymerase zeta catalytic subunit

3.7e-27

88.24

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        M DSQSESS+FSVRIVSIDYYLAPPI GLG+SYSSFQGGKVNEVPVLRIYG TPAGQKTC+H+HGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

A0A6J1G355 DNA polymerase zeta catalytic subunit

4.8e-27

91.18

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGD+QSESS+FSVRIVSIDYYLAPPI GLGVSYS FQGGKVN VPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

A0A6J1KIG8 DNA polymerase zeta catalytic subunit

3.3e-28

94.12

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKV+EVPVLRIYGSTPAGQKTCVHVHGV P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

SwissProt top hits

e value

%identity

Alignment

O60673 DNA polymerase zeta catalytic subunit

2.9e-13

54.24

Show/hide

Query:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        +FSVRIV+ DYY+A P+ GL    S      V +VPV+R++G+TPAGQKTC+H+HG+ P
Subjt:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

Q61493 DNA polymerase zeta catalytic subunit

8.5e-13

54.24

Show/hide

Query:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        +FSVRIV+ DYY+A P+ GL    S      V +VPV+R++G+TPAGQKTC+H+HG+ P
Subjt:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

Q766Z3 DNA polymerase zeta catalytic subunit

7.0e-23

72.06

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC+H+H   P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

Q9GSR1 DNA polymerase zeta catalytic subunit

8.0e-11

47.46

Show/hide

Query:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        V+SVR+V  D+Y+  P  G+   YS  +G ++  VPV+R++G    GQKTC+HVHGV P
Subjt:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

Arabidopsis top hits

e value

%identity

Alignment

AT1G67500.1 recovery protein 3

4.9e-24

72.06

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC+H+H   P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

AT1G67500.2 recovery protein 3

4.9e-24

72.06

Show/hide

Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP
        M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC+H+H   P
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGGATTCGCAATCAGAATCGAGCGTTTTCAGTGTTCGGATCGTCTCCATCGATTACTACCTTGCGCCTCCAATTACAGGCCTCGGCGTATCCTACAGTAGTTTTCA
AGGCGGGAAGGTGAACGAGGTCCCGGTATTGAGAATATATGGTTCCACTCCAGCTGGTCAGAAAACATGCGTCCATGTTCATGGAGTAAGACCTGTTACTGAGTCTCGAA
TAGGCATTTGA

mRNA sequence

Show/hide mRNA sequence

CACCGCGCCATTTTCTTGCGCCAAACTTAACACGAACAGAAGCAAATTGCTTTGCTGTCTGGTGCAGCTAAGTCCACGAAACTCAAATTCACCTACTCATTCATCAATGG
ATTTTCGTTATTCCCTTCTCGTGGTTAATGATTCTACATCACTGTCTTTGTTCCGGTAAATTGGAAGCAAGACAATGGGGGATTCGCAATCAGAATCGAGCGTTTTCAGT
GTTCGGATCGTCTCCATCGATTACTACCTTGCGCCTCCAATTACAGGCCTCGGCGTATCCTACAGTAGTTTTCAAGGCGGGAAGGTGAACGAGGTCCCGGTATTGAGAAT
ATATGGTTCCACTCCAGCTGGTCAGAAAACATGCGTCCATGTTCATGGAGTAAGACCTGTTACTGAGTCTCGAATAGGCATTTGA

Protein sequence

Show/hide protein sequence

MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGVRPVTESRIGI

Lsi11G005740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome