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Lsi11G006060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G006060
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein PP2-B15-like
Genome locationchr11:6410060..6412126
RNA-Seq ExpressionLsi11G006060
SyntenyLsi11G006060
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599205.1 F-box protein PP2-B15, partial [Cucurbita argyrosperma subsp. sororia]2.1e-3786.6Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR
        MAGISSIGVLPEDCVSAILSLTTP+DAGKLSLVSS FRSAAESDVVW RFLPKNYAEI+AAS+ISGE PL SKRE FFRLCSPIL+DGGKK F   R
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR

KAG6599216.1 F-box protein PP2-B15, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3690.11Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKK
        MAGISSIGVLPEDCVSAILSLTTP+DAGKLSLVSS FRSAAESDVVW RFLPKNYAEI+AAS+ISGE PL SKRE FFRLCSPIL+DGGKK
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKK

KAG7030140.1 F-box protein PP2-B15, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-3786.6Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR
        MAGISSIGVLPEDCVSAILSLTTP+DAGKLSLVSS FRSAAESDVVW RFLPKNYAEI+AAS+ISGE PL SKRE FFRLCSPIL+DGGKK F   R
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR

XP_022946535.1 F-box protein PP2-B15-like [Cucurbita moschata]6.2e-3785.57Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR
        MAGISSIGVLPEDCVSAILSLTTP+DAGKLSLVSS FRSAAESDVVW RFLPKNYAEI+AAS+ISGE PL SKRE FFRLCSPIL++GGKK F   R
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR

XP_023545312.1 F-box protein PP2-B15-like [Cucurbita pepo subsp. pepo]2.8e-3786.6Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR
        MAGISSIGVLPEDCVSAILSLTTP+DAGKLSLVSS FRSAAESDVVW RFLPKNYAEI+AAS+ISGE PL SKRE FFRLCSPIL+DGGKK F   R
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR

TrEMBL top hitse value%identityAlignment
A0A0A0LJT8 F-box domain-containing protein1.3e-3586.02Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIF
        MAGISSIGVLPEDCVSAILSLT+PSDAGKL+LVSS FRSAAESDVVWGRFLP+NY EI+AASE+SGE PL SKRE FFRLCSPIL+D GKK F
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIF

A0A0A0LLX5 F-box domain-containing protein5.6e-3686.02Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIF
        MAGISSIGVLPEDC+SAILSLTTPSDAGKL+LVSS FRSAAESDVVWGRFLP+NY EI+AASE+SGE PL SKRE FFRLCSPIL+D GKK F
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIF

A0A6J1G450 F-box protein PP2-B15-like3.0e-3785.57Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR
        MAGISSIGVLPEDCVSAILSLTTP+DAGKLSLVSS FRSAAESDVVW RFLPKNYAEI+AAS+ISGE PL SKRE FFRLCSPIL++GGKK F   R
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR

A0A6J1KDI1 F-box protein PP2-B15-like2.5e-3682.47Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR
        MAGISSIGVLPEDC+SAIL LTTP+DAGKLSLVSS FRSAAESDVVW RFLP+NYAEI+AAS+I+GE PL SKRE FFRLCSPIL+DGGKK F   R
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR

A0A6J1KF36 F-box protein PP2-B15-like1.5e-3682.47Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR
        MAGISSIGVLPEDC+SAILSLTTP+DAGKLSLVSS FRSAAESDVVW RFLP+NYAEI+A S+I+GE PL SKRE FFRLCSPIL+DGGKK F   R
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGR

SwissProt top hitse value%identityAlignment
O80494 F-box protein PP2-B152.6e-1446.51Show/hide
Query:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR
        +LPE CV+ ILS TTP+D    + VSS FR A +SD VW +FLP +Y  +++ S        SSK+E++  LC  IL+D G+KIF+
Subjt:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR

Q3E6P4 F-box protein At2g022409.0e-1544.57Show/hide
Query:  GISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF
        G S   VLPEDC+S I+S T+P DA   + VS  F SA  SD VW +FLP  Y  +++ S +      +SK+E++F LC +P+L++ GKK F
Subjt:  GISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF

Q9C7K0 F-box protein VBF3.8e-1341.86Show/hide
Query:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR
        +LPE C++ IL+ T+P+DA   S VSS FR A +SD VW +FLP +Y  +++ S       +SSK+E++  LC  +L+D  +K+F+
Subjt:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR

Q9ZVQ9 F-box protein PP2-B71.7e-1344.83Show/hide
Query:  SIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKK
        S+G LPE+C+S I+S T+P DA   +LVS  F SA +SD+VW +F+P  Y  +L+ S+       SSK+E+FF LC   +L++  KK
Subjt:  SIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKK

Q9ZVR5 Putative F-box protein PP2-B24.9e-1341.49Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF
        ++G S    LPEDC+S I+S T+P DA   + VS  F SA  SD VW +FLP +Y+ ++  S +      SSK+E++F +C +P+L++ G K F
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF

Arabidopsis top hitse value%identityAlignment
AT1G09155.1 phloem protein 2-B151.9e-1546.51Show/hide
Query:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR
        +LPE CV+ ILS TTP+D    + VSS FR A +SD VW +FLP +Y  +++ S        SSK+E++  LC  IL+D G+KIF+
Subjt:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR

AT1G56250.1 phloem protein 2-B142.7e-1441.86Show/hide
Query:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR
        +LPE C++ IL+ T+P+DA   S VSS FR A +SD VW +FLP +Y  +++ S       +SSK+E++  LC  +L+D  +K+F+
Subjt:  VLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFR

AT2G02240.1 F-box family protein6.4e-1644.57Show/hide
Query:  GISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF
        G S   VLPEDC+S I+S T+P DA   + VS  F SA  SD VW +FLP  Y  +++ S +      +SK+E++F LC +P+L++ GKK F
Subjt:  GISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF

AT2G02250.1 phloem protein 2-B23.5e-1441.49Show/hide
Query:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF
        ++G S    LPEDC+S I+S T+P DA   + VS  F SA  SD VW +FLP +Y+ ++  S +      SSK+E++F +C +P+L++ G K F
Subjt:  MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKKIF

AT2G02320.1 phloem protein 2-B71.2e-1444.83Show/hide
Query:  SIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKK
        S+G LPE+C+S I+S T+P DA   +LVS  F SA +SD+VW +F+P  Y  +L+ S+       SSK+E+FF LC   +L++  KK
Subjt:  SIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLC-SPILLDGGKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGAATTTCGAGCATCGGAGTGTTGCCGGAGGACTGTGTTTCGGCGATTCTGTCACTCACAACTCCCTCCGACGCCGGGAAATTATCCCTCGTCTCGTCGGCGTT
TCGGTCGGCGGCGGAATCAGACGTCGTTTGGGGCAGATTTTTGCCGAAAAACTACGCCGAAATTCTGGCAGCGTCTGAAATCTCCGGCGAGTGTCCATTGAGTTCGAAGA
GAGAGGTTTTCTTCCGACTCTGTTCTCCGATACTTCTGGACGGCGGTAAAAAGATTTTCAGAAGTGGCAGAGCTTAG
mRNA sequenceShow/hide mRNA sequence
CATCTAATCCCATCCCTTTTGCTTAAACCAGCAGACTTTAAACGAATTAAGAGAGAGAAAGTGTATCTATATAAACCCAATTCCCAAATTCCATCTCTTACAGACCCAAC
CAAATCCAAGAGATACAAAATTGAGAGAGAGATTTAAATTTTGATTTTTAAAAATGGCCGGAATTTCGAGCATCGGAGTGTTGCCGGAGGACTGTGTTTCGGCGATTCTG
TCACTCACAACTCCCTCCGACGCCGGGAAATTATCCCTCGTCTCGTCGGCGTTTCGGTCGGCGGCGGAATCAGACGTCGTTTGGGGCAGATTTTTGCCGAAAAACTACGC
CGAAATTCTGGCAGCGTCTGAAATCTCCGGCGAGTGTCCATTGAGTTCGAAGAGAGAGGTTTTCTTCCGACTCTGTTCTCCGATACTTCTGGACGGCGGTAAAAAGATTT
TCAGAAGTGGCAGAGCTTAGAACAGTGAGTTGGCTAGAAATTAATGGGAAAATCAGAACCCAAATGCTTTCTTCAAACACAAAATATGGAGCATTTCTTTTGGTGAAGAT
TTCAGAGAGAGCTTATGGATTGGATTTGATGCCAACTCAAGTTTCTGTTCAATTGGGAAATAACATTATTTCTGAAGCCTCTGTTTGGTTGCAACATAAAGATGAAAAGA
AGCAAAATTTGGAGTGTTTGTTTTATGGGAATAGAAGGGAAAGAGCCAGAAGTTTAATGGTGGCTGATCATCAAGAAATTAGGGTTTTAAGAGAGAGAGAAGATGGTTGG
TTGGAGATTGAATTAGGAGAATTTTTCAGTGGGGAAAATGATGAACAAATCAATATGAGTTTCATGGAAACCAAAGGCTTTCAACTCAAATCCGGACTTCTTATTCAAGG
CATTCAAATCCGACCTAAAAATTGAGGGTTAATTCGATCATAGTTTAATAGATGAGGTTATACGAATTATCTTTCGTAATTCGATTTCTCGTCTACAATTTGTTGGTCTA
GAAAGAGAGAACTGAACAAAATCAGTTGTTGATTATTGATTATTGATTATTTTATTCATTAAGAATCTATGACCTTTTAAGTGAAGTTGTTAACTTTTCTCATCTAATTG
GAATTATGTTTAAAATTGATATTTTTTTTTTAATATAGCAAAA
Protein sequenceShow/hide protein sequence
MAGISSIGVLPEDCVSAILSLTTPSDAGKLSLVSSAFRSAAESDVVWGRFLPKNYAEILAASEISGECPLSSKREVFFRLCSPILLDGGKKIFRSGRA