CuGenDBv2

Gene ID	Lsi11G006260
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Antigenic heat-stable 120 kDa protein
Genome location	chr11:6644303..6647140
RNA-Seq Expression	Lsi11G006260
Synteny	Lsi11G006260
Gene Ontology terms	GO:0006415 - translational termination (biological process) GO:0005737 - cytoplasm (cellular component) GO:0016149 - translation release factor activity, codon specific (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004144753.1 uncharacterized protein LOC101204620 [Cucumis sativus]

9.2e-90

94.15

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLF PQNGD+  VKETE+EKGKGKEPEDNYHKEKS  +RKRSFNDMNGKEE+T+ADGAGE+LAVPEEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

XP_008453632.1 PREDICTED: uncharacterized protein LOC103494285 [Cucumis melo]

9.2e-90

95.21

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLF PQNGD+  VKETE EKGKGKEPEDNYHKEKS  VRKRSFNDMNGKEEN VADGAGE+LAVPEEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

XP_022156356.1 uncharacterized protein LOC111023270 [Momordica charantia]

1.7e-88

92.55

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSS+ITPEDVL+SLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFD+LRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSG+EPPLFPPQNGD+A VKE ENEKGKGKEPED+Y KEKSHSVRKRSFNDMNG+EEN VA+GAGENLA+PEE SRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

XP_022938214.1 uncharacterized protein LOC111444361 [Cucurbita moschata]

8.6e-88

92.55

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLFPP+NGDI  VKETEN+KGKGKEPED+YHKEKS  VRKRSF DMNGK+EN V DGAGENLA  EEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

XP_038890481.1 uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida]

2.6e-92

95.74

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        M SSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLFPPQNGD+  VKETENEKGKGKEPEDNYHKEKSH +RKRSFNDMNGKEEN VADGAGE+LAVPEEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGM0 Uncharacterized protein

4.5e-90

94.15

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLF PQNGD+  VKETE+EKGKGKEPEDNYHKEKS  +RKRSFNDMNGKEE+T+ADGAGE+LAVPEEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

A0A1S3BWQ6 uncharacterized protein LOC103494285

4.5e-90

95.21

Show/hide

Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLF PQNGD+  VKETE EKGKGKEPEDNYHKEKS  VRKRSFNDMNGKEEN VADGAGE+LAVPEEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

A0A5D3BAZ9 Uncharacterized protein

4.5e-90

95.21

Show/hide

Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLF PQNGD+  VKETE EKGKGKEPEDNYHKEKS  VRKRSFNDMNGKEEN VADGAGE+LAVPEEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

A0A6J1DQE8 uncharacterized protein LOC111023270

8.4e-89

92.55

Show/hide

Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSS+ITPEDVL+SLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFD+LRQELEAPVLEKASKSVWELILDNNGLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSG+EPPLFPPQNGD+A VKE ENEKGKGKEPED+Y KEKSHSVRKRSFNDMNG+EEN VA+GAGENLA+PEE SRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

A0A6J1FDE9 uncharacterized protein LOC111444361

4.2e-88

92.55

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP
        NDTVEKVFCRLSGKEPPLFPP+NGDI  VKETEN+KGKGKEPED+YHKEKS  VRKRSF DMNGK+EN V DGAGENLA  EEHSRSP
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12530.1 unknown protein

1.4e-16

39.29

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Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        M  +  I+ E+V+E L +DG  D LRLKII +LK NE+L+N  I +V++S  L   GA+    R+L DA+ +E+ + +L + S  +W +I   +G+  EI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLS
         +TV+ V+  LS
Subjt:  NDTVEKVFCRLS

AT1G56420.1 unknown protein

1.1e-51

60.94

Show/hide

Query:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI
        MSSSSVI PEDVLE LMNDGTID+LRL+IINQLKANEELK+TTIKM E+SKVLNTPGAEKQTKRELFDALRQELE PVLEKASKSVW+LI++ +GLGKEI
Subjt:  MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEI

Query:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGK----EENTVADGAGENLAVPEEHSRSP
        N+TVE+VFC LSG+EPP +   N     V++T  E  K  E +D+         +KRS +++N      E  T     G++  V  E  ++P
Subjt:  NDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGK----EENTVADGAGENLAVPEEHSRSP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTTCTTCTTCAGTAATAACTCCGGAAGACGTGCTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTCAGGTTGAAGATCATTAACCAGCTCAAAGCCAATGA
GGAGCTTAAGAATACCACCATTAAAATGGTTGAACAAAGCAAAGTCCTCAATACTCCTGGGGCAGAGAAACAGACCAAAAGGGAGCTATTCGATGCTCTTCGACAGGAAC
TCGAAGCACCAGTACTTGAGAAAGCCTCTAAATCTGTTTGGGAATTAATTTTGGACAACAATGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGA
TTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTCAAAATGGGGATATTGCATTAGTAAAAGAAACTGAGAACGAGAAAGGCAAGGGAAAAGAACCTGAAGATAATTATCA
CAAGGAGAAATCACACTCTGTTAGGAAAAGGAGTTTCAATGACATGAATGGCAAAGAGGAAAACACTGTTGCAGATGGAGCTGGAGAAAATCTAGCTGTACCTGAAGAAC
ATAGTAGGTCACCTTAG

mRNA sequence

Show/hide mRNA sequence

AGCATTTGTATATTACATATCTTTTGAGAACCCGAGTTAGAAGAAAGAAGAAGAAGCTCTCATCGGAATAAACCAACGAGCAGGTGCGAAAGATCCGTTCGATTCTCAAA
TCACATTGAAATAACCCATTTACTTCAATCATTTAGAACACTTCTTGAAGAGAAAAAAGTTTGAAGAGAAAGATTCATGAGTTCTTCTTCAGTAATAACTCCGGAAGACG
TGCTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTCAGGTTGAAGATCATTAACCAGCTCAAAGCCAATGAGGAGCTTAAGAATACCACCATTAAAATGGTTGAA
CAAAGCAAAGTCCTCAATACTCCTGGGGCAGAGAAACAGACCAAAAGGGAGCTATTCGATGCTCTTCGACAGGAACTCGAAGCACCAGTACTTGAGAAAGCCTCTAAATC
TGTTTGGGAATTAATTTTGGACAACAATGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGATTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTC
AAAATGGGGATATTGCATTAGTAAAAGAAACTGAGAACGAGAAAGGCAAGGGAAAAGAACCTGAAGATAATTATCACAAGGAGAAATCACACTCTGTTAGGAAAAGGAGT
TTCAATGACATGAATGGCAAAGAGGAAAACACTGTTGCAGATGGAGCTGGAGAAAATCTAGCTGTACCTGAAGAACATAGTAGGTCACCTTAGTTGAGTTTGAAGACATA
AACATGTCATGAACCTCAATGACGACGGATCTCGCAGGTATACAATGCGATCATTGGTTCAAGCTCTTTCAAATTAATCTGATGAGCATGGCCCGTGTCAAACACACGAA
ATTTGCCACACACACAACTGATTGGAGTCCAAAATTTTGTTTGTGTGGATGTAGAAGAACACTTCTTTGATCTTTAATGTTCCCATTAACTTTATGTTTAGGAAATAGGG
TGGTTAGTGGTAAAAGACTAATTTTTGTAATCTAATCTATCTACCCATGTCAATGCTGTGAAAAGCCATATAAATACTGATTGGCCTTGTTGTGCAGTACTCAGAAGACT
ATATAGATGAAGCTTTCCAGAATTTTCTTTGTTC

Protein sequence

Show/hide protein sequence

MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCR
LSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

Lsi11G006260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome