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Lsi11G006530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G006530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTrafficking protein particle complex subunit
Genome locationchr11:6868980..6872668
RNA-Seq ExpressionLsi11G006530
SyntenyLsi11G006530
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR007233 - Trafficking protein particle complex subunit
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599171.1 Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia]4.2e-7594.63Show/hide
Query:  SKKLDLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME
        S + DLK MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG ELLEADTFDLHCFQSLTGTKFFVVCEPGT HME
Subjt:  SKKLDLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME

Query:  GLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        GLLKYIYELYTD+VLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
Subjt:  GLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

KGN61053.2 hypothetical protein Csa_021294 [Cucumis sativus]2.9e-7698.62Show/hide
Query:  DLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLK
        DLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLK
Subjt:  DLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLK

Query:  YIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        YIYELYTDFVLKNPFYEMEMPIRCELFDINL QAVQKDRVALLGR
Subjt:  YIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

XP_004144741.1 trafficking protein particle complex subunit 4 [Cucumis sativus]7.8e-7498.58Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL QAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

XP_008453237.1 PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo]2.3e-7397.87Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL QAVQK+RVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

XP_022156391.1 trafficking protein particle complex subunit 4 [Momordica charantia]2.3e-7397.16Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

TrEMBL top hitse value%identityAlignment
A0A0A0LJ20 Trafficking protein particle complex subunit3.8e-7498.58Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL QAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

A0A1S3BVQ7 Trafficking protein particle complex subunit1.1e-7397.87Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL QAVQK+RVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

A0A5A7TWY1 Trafficking protein particle complex subunit1.1e-7397.87Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL QAVQK+RVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

A0A6J1DUU4 Trafficking protein particle complex subunit1.1e-7397.16Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

A0A6J1KK16 Trafficking protein particle complex subunit2.5e-7397.16Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG ELLEADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTD+VLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

SwissProt top hitse value%identityAlignment
Q2TBL9 Trafficking protein particle complex subunit 48.5e-3157.55Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LVQAVQ
        L  A++
Subjt:  LVQAVQ

Q54UU1 Trafficking protein particle complex subunit 46.3e-3452Show/hide
Query:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAG-CSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELY
        I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP++G  SG+E++E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELY
Subjt:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAG-CSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELY

Query:  TDFVLKNPFYEMEMPIRCELFDINL
        TD+VLKNPFYE+EM IRC+LFD  L
Subjt:  TDFVLKNPFYEMEMPIRCELFDINL

Q69BT7 Trafficking protein particle complex subunit 48.5e-3157.55Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LVQAVQ
        L  A++
Subjt:  LVQAVQ

Q9ES56 Trafficking protein particle complex subunit 48.5e-3157.55Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LVQAVQ
        L  A++
Subjt:  LVQAVQ

Q9Y296 Trafficking protein particle complex subunit 41.9e-3056.6Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHC+Q+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LVQAVQ
        L  A++
Subjt:  LVQAVQ

Arabidopsis top hitse value%identityAlignment
AT1G51160.1 SNARE-like superfamily protein1.3e-1027.08Show/hide
Query:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------------AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGT
        + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+               GCS       +T+ L   ++ +G K  +V  P T
Subjt:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------------AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGT

Query:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ
          +   LKYIY LY ++V+KNP Y    PI+ ELF+  L Q V+
Subjt:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ

AT1G51160.2 SNARE-like superfamily protein1.3e-1027.08Show/hide
Query:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------------AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGT
        + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+               GCS       +T+ L   ++ +G K  +V  P T
Subjt:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------------AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGT

Query:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ
          +   LKYIY LY ++V+KNP Y    PI+ ELF+  L Q V+
Subjt:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ

AT5G02280.1 SNARE-like superfamily protein7.8e-7290.07Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP+ GCSG+ELLEADTFDLHCFQSL GTKFFVVCEPGT HME LL+YIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
        LYTD+VLKNPFYE+EMPIRCELFDINL QAVQ DRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGTACTAGTAAAGAAGAGAAAGTATTTACTTAAAGCTACTAGAGCAATTGCTAGTGTTTTGTTTTCCAGATTTGGGAAGGCACGGGGAAGGAGAAGGCGGCTAAA
ACTTTCGAGTCATACTCCAGATCCCTTTCAAATTACTAGACATGCGGTCATGGATCAAATTGGGTTCAGCAAGAAATTAGATCTAAAGACGATGGCAGCAATTTACAGCC
TCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCGAGTTTATGGCATTCGATG
CATGCCATTTCCCAGCAGCTTTCGCCTATAGCCGGTTGTTCGGGTGTTGAACTTCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGGACAAAGTT
TTTTGTTGTGTGTGAGCCCGGGACACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGC
CTATACGGTGTGAGCTCTTTGACATCAACCTAGTGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGTACTAGTAAAGAAGAGAAAGTATTTACTTAAAGCTACTAGAGCAATTGCTAGTGTTTTGTTTTCCAGATTTGGGAAGGCACGGGGAAGGAGAAGGCGGCTAAA
ACTTTCGAGTCATACTCCAGATCCCTTTCAAATTACTAGACATGCGGTCATGGATCAAATTGGGTTCAGCAAGAAATTAGATCTAAAGACGATGGCAGCAATTTACAGCC
TCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCGAGTTTATGGCATTCGATG
CATGCCATTTCCCAGCAGCTTTCGCCTATAGCCGGTTGTTCGGGTGTTGAACTTCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGGACAAAGTT
TTTTGTTGTGTGTGAGCCCGGGACACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGC
CTATACGGTGTGAGCTCTTTGACATCAACCTAGTGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGAGCTTAGGACATCCTTCATTTTGTCAGTATTGAC
CATCCACAATTCAAGAAAGAAAGGCTCGTGATATTATTGTGCAAAGTACTTGATAATTTACCTTCCTTAATGCTAAATGTATTCCATTCCTAGTGAATCGTGTGAGATTT
GGTGGAAATAGAATGTTTCTTTTTAGTGTTGTTCGCCAGAAACTCAAGGTTAATTTTATACCCAAATTTTTGTCAATTGTATACAGATCTTGATCCAGTTAAATGACAGA
GCAACGTCATGTTATAAACTTTTGGGGCCATGGTTAACTTAA
Protein sequenceShow/hide protein sequence
MPVLVKKRKYLLKATRAIASVLFSRFGKARGRRRRLKLSSHTPDPFQITRHAVMDQIGFSKKLDLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSM
HAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR