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Lsi11G006640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G006640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S23-1
Genome locationchr11:6990642..6994296
RNA-Seq ExpressionLsi11G006640
SyntenyLsi11G006640
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156333.1 uncharacterized protein LOC111023254 [Momordica charantia]1.1e-4694.95Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRR LGFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGA SMSATSALLVRLFSPECEPQNIAAYDKRKVVR
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

XP_022937466.1 uncharacterized protein LOC111443868 [Cucurbita moschata]8.7e-4794.95Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDK +  R
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

XP_022969628.1 uncharacterized protein LOC111468599 [Cucurbita maxima]3.0e-4795.96Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDK K  R
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

XP_023538321.1 uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo]6.6e-4794.95Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRRF GFSDG+LMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDK K  R
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

XP_038889141.1 uncharacterized protein LOC120079031 [Benincasa hispida]9.3e-4997.98Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRRFLGFSDGE+MRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVV+
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

TrEMBL top hitse value%identityAlignment
A0A1S3BWM4 uncharacterized protein LOC1034939371.6e-4389.69Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKV
        MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD+ K+
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKV

A0A5D3BBN9 40S ribosomal protein S23-11.6e-4389.69Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKV
        MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD+ K+
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKV

A0A6J1DQC3 uncharacterized protein LOC1110232545.5e-4794.95Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRR LGFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGA SMSATSALLVRLFSPECEPQNIAAYDKRKVVR
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

A0A6J1FAF1 uncharacterized protein LOC1114438684.2e-4794.95Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDK +  R
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

A0A6J1I1J3 uncharacterized protein LOC1114685991.4e-4795.96Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDK K  R
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G57540.1 unknown protein1.7e-4078.12Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRK
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLRWA CGA S+S ++A+LVRLFSPECEPQNIAAYD  K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRK

AT1G57540.2 unknown protein1.7e-4078.12Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRK
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLRWA CGA S+S ++A+LVRLFSPECEPQNIAAYD  K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRK

AT1G57540.3 unknown protein1.7e-4078.12Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRK
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLRWA CGA S+S ++A+LVRLFSPECEPQNIAAYD  K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTTCGACGATTCTTAGGCTTTTCAGATGGTGAGCTCATGAGATCAGATGCTAAGCCCTGTTCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTTGGAGG
AGGACTTGCGTTCTGGATTCTTTGTAGATTACATTATGGTCCAAGAATTACAGTACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGCATCGATGAGTGCAACCTCAG
CTTTGCTTGTCCGATTGTTTAGTCCAGAATGTGAACCCCAGAATATAGCTGCTTATGACAAAAGGAAAGTTGTAAGGTAA
mRNA sequenceShow/hide mRNA sequence
CTCTACTCTCTTTTGGTACTTCTCCTCTGAGTTCTAAACCTCAAATTCTTTAACCGGCGGCGGGGCGCCCCCAAAGCATCGGTACGCCGGCCAAGAGTTGTTGTTATCGC
CTCAAGCAATTGGTCTGTGTTTCTTCTCGCCCCATTTGATTTGGCAAATTAGCAAATGGCACTTCGACGATTCTTAGGCTTTTCAGATGGTGAGCTCATGAGATCAGATG
CTAAGCCCTGTTCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTTGGAGGAGGACTTGCGTTCTGGATTCTTTGTAGATTACATTATGGTCCAAGAATTACAGTA
CCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGCATCGATGAGTGCAACCTCAGCTTTGCTTGTCCGATTGTTTAGTCCAGAATGTGAACCCCAGAATATAGCTGCTTA
TGACAAAAGGAAAGTTGTAAGGTAATTGACATTCATAGAGTAATTATCTTACTGTATCATTAAATGCTGTTATTCAGATGTTTCCTTATTAGGAGCTAACTGATGTAATT
AGTTTTGGTTAGGTTAATGATGATGTTATTGTTATGTCTTATTGACTCTTATCAAGCCAAGGCCCATGTCTAGATTGGGTGTGGGGCTTTAGGCTATAAAACTAAGGGTA
ATTGTAATGAATACCAATTTTAGAGATAATAACCGAGTATATAGCAACACTTTTAAAAAATTGCAAATATAGCAAAGTCAATTAGTGATAGACTTCTATCGCTAATAGAC
TCTGTGATAGACCACCTAGACCATAAAAGTCTATCATTGATAGATTTTGCTATATTTACAATTTTTTTAAAATATTATTATATATGGTAATATTTTGAATCTGATTGTTA
TATTTGCAACTGTCCCTAAAACTAAAATCCCTAAAACTAAAAAGGAGTTTTAGGCCTACCCTTCTATTTTTTTCTTCAATAACAATTCGGTTATTGAAAGAAAAAAGATT
TTAG
Protein sequenceShow/hide protein sequence
MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVR